#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 4 51-52-32-43-4
1 IL_4Y4O_2094Y4O0.77440Minor groove platform2A LSU rRNAC898A899*U877A878G879cWWcWW
2 IL_4V88_4454V880.59130Minor groove platformA6 SSU rRNAG1178G1179*C1459A1460C1461cWWcWW
3 IL_4V9F_0324V9F0.72350Single bulged A0 LSU rRNAC1023G1024*U942A943G944cWWcWW
4 IL_4R4V_0014R4V0.50230Minor groove platformAVS ribozyme RNAU607G608*U777U778A779cWWcWW
5 IL_4R4V_0074R4V0.50230Minor groove platformAVS ribozyme RNAU607||||7_556G608||||7_556*U777||||7_556U778||||7_556A779||||7_556cWWcWW
6 IL_3IWN_0013IWN0.48210Minor groove platformAC-di-GMP riboswitchA2C3*G89A90U91cWWncWW
7 IL_5J7L_0645J7L0.57790Single bulged AAA SSU rRNAC1460G1461*U1440A1441G1442cWWcWW
8 IL_3K0J_0023K0J0.40810Minor groove platform relatedERNA (87-MER)A35G36*C18C19U20cWWcWWncSH
9 IL_2GDI_0032GDI0.35420Minor groove platformXTPP riboswitchA35G36*C23C24U25cWWcWWncSH
10 IL_3RW6_0013RW60.49951Minor groove platformHconstitutive transport element(CTE)of Mason-Pfizer monkey virus RNAA7A8*U53A55U56cWWcWWncSH
11 IL_5VSU_0035VSU0.40670Single stack bendI U6 snRNAC69U70*A75A76G77cWWcWW
12 IL_4V88_4124V880.23040Minor groove platformA6 SSU rRNAU532U533*A518C519A520cWWcWWntSH
13 IL_5TBW_0395TBW0.22460Minor groove platform1 LSU rRNAA997A998*U1050U1051U1052cWWcWWtSHncSH
14 IL_6DLR_0036DLR0.27190Minor groove platformAGuanidine-I riboswitchC21G22*C39U40G41cWWcWWtSHcSH
15 IL_5T83_0035T830.31930Minor groove platformAGuanidine-I riboswitchC21G22*C36U37G38cWWcWWntSHncSH
16 IL_2QWY_0092QWY0.35110Minor groove platformCSAM-II riboswitchC23A24*U40A41G42cWWcWWtSH
17 IL_5ML7_0095ML70.40710Minor groove platformB23S ribosomal RNAC2201G2202*C2177A2178G2179cWWcWWtSH
18 IL_5J7L_0425J7L0.40640Minor groove platformAA SSU rRNAG953G954*C1226A1227C1228cWWcWWntSH
19 IL_4LFB_0384LFB0.33520Minor groove platformA SSU rRNAG953G954*C1226A1227C1228cWWcWWntSH
20 IL_6DTD_0036DTD0.25780Minor groove platformCRNA (37-MER)U15C16*G22A23A24cWWcWWtSHcSH
21 IL_1U6B_0071U6B0.27310Minor groove platformB197-MERC177C178*G128A129G130cWWcWWtSHcSH
22 IL_5J7L_3245J7L0.21101Minor groove platformDA LSU rRNAA2070A2071*U2438C2440U2441cWWcWWcSH
23 IL_5TBW_0945TBW0.24411Minor groove platform1 LSU rRNAG2412A2413*U2807C2809C2810cWWcWWcSH
24 IL_4IOA_0764IOA0.24721Minor groove platformX LSU rRNAG2053A2054*U2417C2419C2420cWWcWWcSH
25 IL_4Y4O_2544Y4O0.20451Minor groove platform2A LSU rRNAG2070A2071*U2438C2440C2441cWWcWWcSH
26 IL_4V9F_0754V9F0.22781Minor groove platform0 LSU rRNAG2111A2112*U2473C2475C2476cWWcWWcSH
27 IL_4WF9_0814WF90.24411Minor groove platformX LSU rRNAG2097A2098*U2465C2467C2468cWWcWWcSH
28 IL_4IOA_0274IOA0.15630Minor groove platformX LSU rRNAG875A876*U925C926C927cWWcWWcSH
29 IL_4WF9_0324WF90.08410Minor groove platformX LSU rRNAG907A908*U958C959C960cWWcWWcSH
30 IL_4V9F_0344V9F0.00000Minor groove platform0 LSU rRNAG956A957*U1009C1010C1011cWWcWWcSH
31 IL_4Y4O_2054Y4O0.08130Minor groove platform2A LSU rRNAG862A863*U913C914C915cWWcWWcSH
32 IL_5J7L_2475J7L0.20180Minor groove platformDA LSU rRNAG43A44*U434C435C436cWWcWWcSH
33 IL_4Y4O_1814Y4O0.29870Minor groove platform2A LSU rRNAG42A43*U434C435C436cWWcWWcSH
34 IL_4IOA_0034IOA0.33810Minor groove platformX LSU rRNAG42A43*U447C448C449cWWcWWcSH
35 IL_4LFB_0454LFB0.67772Minor groove platformA SSU rRNAG1057G1058*U1199G1202C1203cWWcWWtSH
36 IL_5J7L_0485J7L0.63802Minor groove platformAA SSU rRNAG1057G1058*U1199U1202C1203cWWcWWtSH
37 IL_6CZR_1166CZR0.66270Minor groove platform1a SSU rRNAA352G353*C55A56U57cWWcWWntSH
38 IL_5J7L_0045J7L0.61730Minor groove platformAA SSU rRNAA356G357*C54A55U56cWWcWWtSH
39 IL_4LFB_0044LFB0.59510Minor groove platformA SSU rRNAA356G357*C54A55U56cWWcWWtSH
40 IL_4V88_3884V880.55390Minor groove platformA6 SSU rRNAA428G429*C50A51U52cWWcWWtSH
41 IL_4LFB_0544LFB0.59910Minor groove platformA SSU rRNAG1273G1274*C1260A1261C1262cWWncWWtSH
42 IL_4UYK_0014UYK0.53320Minor groove platformRSRP RNAG77G78*C122A123C124cWWtSH
43 IL_4V88_4544V880.42640Minor groove platformA6 SSU rRNAC1317G1318*C1306U1307G1308cWWcWWtSHcSH
44 IL_4Y4O_2464Y4O0.49281Minor groove platform2A LSU rRNAC1893C1894*G1846A1848G1849cWWcWWncSW
45 IL_5J7L_3145J7L0.70191Minor groove platform, major groove intercalationDA LSU rRNAC1902G1903*C1837G1839G1840cWWcWWntSH

3D structures

Complete motif including flanking bases
SequenceCounts
GA*UCC7
GG*CAC5
GA*UACC5
AG*CAU4
CG*CUG3
CA*UAG2
CG*UAG2
UG*UUA2
AG*CCU2
AC*GAU1
AA*UAAU1
CU*AAG1
UU*ACA1
AA*UUU1
CG*CAG1
UC*GAA1
CC*GAG1
AA*UACU1
GG*UCAGC1
GG*UCAUC1
CC*GAAG1
CG*CCGG1
Non-Watson-Crick part of the motif
SequenceCounts
*A18
*C10
*U6
*AC6
*AA2
*CAG1
*CAU1
*CG1

Release history

Release3.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.45
Date2019-11-132019-12-112020-01-082020-02-052020-03-042020-04-012020-04-292020-05-272020-06-242020-07-222020-08-192020-09-162020-10-142020-11-112020-12-092021-01-062021-02-032021-03-032021-03-312021-04-282021-05-26
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Minor groove platform (40)
  • Single bulged A (2)
  • Minor groove platform related (1)
  • Minor groove platform, major groove intercalation (1)
  • Single stack bend (1)
  • Basepair signature
    cWW-tSH-cWW
    Heat map statistics
    Min 0.05 | Avg 0.52 | Max 0.99
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