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Motif IL_06437.7 Version IL_06437.7 of this group appears in releases 3.46 to 3.47

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 4 51-52-32-43-4
1 IL_4Y4O_2094Y4O0.77440Minor groove platform2A LSU rRNAC898A899*U877A878G879cWWcWW
2 IL_4V88_4454V880.59130Minor groove platformA6 SSU rRNAG1178G1179*C1459A1460C1461cWWcWW
3 IL_4V9F_0324V9F0.72350Single bulged A0 LSU rRNAC1023G1024*U942A943G944cWWcWW
4 IL_4R4V_0014R4V0.50230Minor groove platformAVS ribozyme RNAU607G608*U777U778A779cWWcWW
5 IL_4R4V_0074R4V0.50230Minor groove platformAVS ribozyme RNAU607||||7_556G608||||7_556*U777||||7_556U778||||7_556A779||||7_556cWWcWW
6 IL_3IWN_0013IWN0.48210Minor groove platformAC-di-GMP riboswitchA2C3*G89A90U91cWWncWW
7 IL_5J7L_0645J7L0.57790Single bulged AAA SSU rRNAC1460G1461*U1440A1441G1442cWWcWW
8 IL_3K0J_0023K0J0.40810Minor groove platform relatedERNA (87-MER)A35G36*C18C19U20cWWcWWncSH
9 IL_2GDI_0032GDI0.35420Minor groove platformXTPP riboswitchA35G36*C23C24U25cWWcWWncSH
10 IL_3RW6_0013RW60.49951Minor groove platformHconstitutive transport element(CTE)of Mason-Pfizer monkey virus RNAA7A8*U53A55U56cWWcWWncSH
11 IL_5VSU_0035VSU0.40670Single stack bendI U6 snRNAC69U70*A75A76G77cWWcWW
12 IL_4V88_4124V880.23040Minor groove platformA6 SSU rRNAU532U533*A518C519A520cWWcWWntSH
13 IL_5TBW_0395TBW0.22460Minor groove platform1 LSU rRNAA997A998*U1050U1051U1052cWWcWWtSHncSH
14 IL_6DLR_0036DLR0.27190Minor groove platformAGuanidine-I riboswitchC21G22*C39U40G41cWWcWWtSHcSH
15 IL_5T83_0035T830.31930Minor groove platformAGuanidine-I riboswitchC21G22*C36U37G38cWWcWWntSHncSH
16 IL_2QWY_0092QWY0.35110Minor groove platformCSAM-II riboswitchC23A24*U40A41G42cWWcWWtSH
17 IL_5ML7_0095ML70.40710Minor groove platformB23S ribosomal RNAC2201G2202*C2177A2178G2179cWWcWWtSH
18 IL_5J7L_0425J7L0.40640Minor groove platformAA SSU rRNAG953G954*C1226A1227C1228cWWcWWntSH
19 IL_4LFB_0384LFB0.33520Minor groove platformA SSU rRNAG953G954*C1226A1227C1228cWWcWWntSH
20 IL_6DTD_0036DTD0.25780Minor groove platformCRNA (37-MER)U15C16*G22A23A24cWWcWWtSHcSH
21 IL_1U6B_0071U6B0.27310Minor groove platformB197-MERC177C178*G128A129G130cWWcWWtSHcSH
22 IL_5J7L_3245J7L0.21101Minor groove platformDA LSU rRNAA2070A2071*U2438C2440U2441cWWcWWcSH
23 IL_5TBW_0945TBW0.24411Minor groove platform1 LSU rRNAG2412A2413*U2807C2809C2810cWWcWWcSH
24 IL_4IOA_0764IOA0.24721Minor groove platformX LSU rRNAG2053A2054*U2417C2419C2420cWWcWWcSH
25 IL_4Y4O_2544Y4O0.20451Minor groove platform2A LSU rRNAG2070A2071*U2438C2440C2441cWWcWWcSH
26 IL_4V9F_0754V9F0.22781Minor groove platform0 LSU rRNAG2111A2112*U2473C2475C2476cWWcWWcSH
27 IL_4WF9_0814WF90.24411Minor groove platformX LSU rRNAG2097A2098*U2465C2467C2468cWWcWWcSH
28 IL_4IOA_0274IOA0.15630Minor groove platformX LSU rRNAG875A876*U925C926C927cWWcWWcSH
29 IL_4WF9_0324WF90.08410Minor groove platformX LSU rRNAG907A908*U958C959C960cWWcWWcSH
30 IL_4V9F_0344V9F0.00000Minor groove platform0 LSU rRNAG956A957*U1009C1010C1011cWWcWWcSH
31 IL_4Y4O_2054Y4O0.08130Minor groove platform2A LSU rRNAG862A863*U913C914C915cWWcWWcSH
32 IL_5J7L_2475J7L0.20180Minor groove platformDA LSU rRNAG43A44*U434C435C436cWWcWWcSH
33 IL_4Y4O_1814Y4O0.29870Minor groove platform2A LSU rRNAG42A43*U434C435C436cWWcWWcSH
34 IL_4IOA_0034IOA0.33810Minor groove platformX LSU rRNAG42A43*U447C448C449cWWcWWcSH
35 IL_7KGA_0067KGA0.52360Single stack bendBFlavivirus DB elementA15U16*A37C38U39cWWcWW
36 IL_4Y4O_2464Y4O0.49281Minor groove platform2A LSU rRNAC1893C1894*G1846A1848G1849cWWcWWncSW
37 IL_4V88_4544V880.42640Minor groove platformA6 SSU rRNAC1317G1318*C1306U1307G1308cWWcWWtSHcSH
38 IL_5J7L_3145J7L0.70191Minor groove platform, major groove intercalationDA LSU rRNAC1902G1903*C1837G1839G1840cWWcWWntSH
39 IL_4UYK_0014UYK0.53320Minor groove platformRSRP RNAG77G78*C122A123C124cWWtSH
40 IL_4LFB_0544LFB0.59910Minor groove platformA SSU rRNAG1273G1274*C1260A1261C1262cWWncWWtSH
41 IL_4V88_3884V880.55390Minor groove platformA6 SSU rRNAA428G429*C50A51U52cWWcWWtSH
42 IL_4LFB_0044LFB0.59510Minor groove platformA SSU rRNAA356G357*C54A55U56cWWcWWtSH
43 IL_5J7L_0045J7L0.61730Minor groove platformAA SSU rRNAA356G357*C54A55U56cWWcWWtSH
44 IL_6CZR_1166CZR0.66270Minor groove platform1a SSU rRNAA352G353*C55A56U57cWWcWWntSH
45 IL_5J7L_0485J7L0.63802Minor groove platformAA SSU rRNAG1057G1058*U1199U1202C1203cWWcWWtSH
46 IL_4LFB_0454LFB0.67772Minor groove platformA SSU rRNAG1057G1058*U1199G1202C1203cWWcWWtSH

3D structures

Complete motif including flanking bases
SequenceCounts
GA*UCC7
GG*CAC5
GA*UACC5
AG*CAU4
CG*CUG3
CA*UAG2
CG*UAG2
UG*UUA2
AG*CCU2
AC*GAU1
AA*UAAU1
CU*AAG1
UU*ACA1
AA*UUU1
CG*CAG1
UC*GAA1
CC*GAG1
AA*UACU1
AU*ACU1
CC*GAAG1
CG*CCGG1
GG*UCAUC1
GG*UCAGC1
Non-Watson-Crick part of the motif
SequenceCounts
*A18
*C11
*U6
*AC6
*AA2
*CG1
*CAU1
*CAG1

Release history

Release3.463.47
Date2021-06-232021-07-21
StatusUpdated, 1 parentExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Minor groove platform (40)
  • Single bulged A (2)
  • Single stack bend (2)
  • Minor groove platform related (1)
  • Minor groove platform, major groove intercalation (1)
    • Basepair signature
    cWW-tSH-cWW
    Heat map statistics
    Min 0.05 | Avg 0.52 | Max 0.99
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