Motif IL_06549.1 Version IL_06549.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_9DFE_021 | 9DFE | 0.1344 | 4 | 1A | LSU rRNA | G | 775 | A | 777 | * | U | 787 | C | 791 | cWW | cWW | |
| 2 | IL_8P9A_261 | 8P9A | 0.1129 | 4 | Multiple bulged bases (H) | AR | LSU rRNA | G | 907 | G | 909 | * | U | 919 | C | 923 | cWW | cWW |
| 3 | IL_5J7L_265 | 5J7L | 0.0974 | 4 | Multiple bulged bases | DA | LSU rRNA | G | 775 | G | 777 | * | C | 787 | C | 791 | cWW | cWW |
| 4 | IL_7A0S_021 | 7A0S | 0.0000 | 4 | Multiple bulged bases | X | LSU rRNA | G | 788 | A | 790 | * | U | 800 | C | 804 | cWW | cWW |
| 5 | IL_4WF9_027 | 4WF9 | 0.1175 | 4 | Multiple bulged bases | X | LSU rRNA | G | 820 | G | 822 | * | C | 832 | C | 836 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGA*UAACC | 2 |
| GGG*UAAUC | 1 |
| GGG*CAAUC | 1 |
| GCG*CAAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*AAC | 2 |
| G*AAU | 2 |
| C*AAU | 1 |
- Annotations
-
- Multiple bulged bases (3)
- Multiple bulged bases (H) (1)
- (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.10 | Avg 0.10 | Max 0.15
Coloring options: