Motif IL_07300.1 Version IL_07300.1 of this group appears in releases 0.9 to 1.4

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6	break		7		8		9	1-3	1-9	2-8	4-9	5-8	6-7
1	IL_3U5F_025	3U5F	0.0000	1	6	18S rRNA	C	443	C	444	A	445	A	446	U	447	C	448	*	G	458	A	460	G	461	cSH	cWW	tWH	cWS	cWW	cWW
2	IL_3U5F_052	3U5F	0.9625	0	6	18S rRNA	G	985	G	986	G	987	A	988	U	989	C	990	*	G	1014	U	1015	C	1016		cWW			cWw	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CCAAUC*GGAG	1
GGGAUC*GUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
CAAU*GA	1
GGAU*U	1

Release history

Release	0.9	0.10	0.11	0.12	1.0	1.1	1.2	1.3	1.4
Date	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-03-04	2013-04-08	2013-05-04	2013-06-01	2013-07-01
Status	New id, 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

Parent motif	Common motif instances	Only in IL_07300.1	Only in the parent motif
IL_43933.1 Compare	IL_3U5F_025	IL_3U5F_052	IL_3U5H_068
IL_56779.1 Compare	IL_3U5F_052	IL_3U5F_025

Children motifs

Child motif	Common motif instances	Only in IL_07300.1	Only in the child motif
IL_07300.2 Compare	IL_3U5F_052, IL_3U5F_025		IL_4BPP_048

Annotations: (2)
Basepair signature: cWW-cSH-L-cWW-cWW
Heat map statistics: Min 0.96 | Avg 0.48 | Max 0.96

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Coloring options: Nucleotide numbers

Motif IL_07300.1 Version IL_07300.1 of this group appears in releases 0.9 to 1.4 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_07300.1 Version IL_07300.1 of this group appears in releases 0.9 to 1.4

Download

Csv

Json