Motif IL_07300.1 Version IL_07300.1 of this group appears in releases 0.9 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 1-3 | 1-9 | 2-8 | 4-9 | 5-8 | 6-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5F_025 | 3U5F | 0.0000 | 1 | 6 | 18S rRNA | C | 443 | C | 444 | A | 445 | A | 446 | U | 447 | C | 448 | * | G | 458 | A | 460 | G | 461 | cSH | cWW | tWH | cWS | ncWW | cWW | |
| 2 | IL_3U5F_052 | 3U5F | 0.9625 | 0 | 6 | 18S rRNA | G | 985 | G | 986 | G | 987 | A | 988 | U | 989 | C | 990 | * | G | 1014 | U | 1015 | C | 1016 | cWW | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCAAUC*GGAG | 1 |
| GGGAUC*GUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAAU*GA | 1 |
| GGAU*U | 1 |
Release history
| Release | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_07300.1 | Only in the parent motif |
|---|---|---|---|
| IL_43933.1 Compare | IL_3U5F_025 | IL_3U5F_052 | IL_3U5H_068 |
| IL_56779.1 Compare | IL_3U5F_052 | IL_3U5F_025 |
Children motifs
| Child motif | Common motif instances | Only in IL_07300.1 | Only in the child motif |
|---|---|---|---|
| IL_07300.2 Compare | IL_3U5F_052, IL_3U5F_025 | IL_4BPP_048 |
- Annotations
- Basepair signature
- cWW-cSH-L-cWW-cWW
- Heat map statistics
- Min 0.96 | Avg 0.48 | Max 0.96
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