Motif IL_07837.1 Version IL_07837.1 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-4 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1VW3_022 | 1VW3 | 0.6469 | 0 | A | 21S ribosomal RNA | G | 727 | C | 728 | C | 729 | * | G | 866 | A | 867 | G | 868 | U | 869 | cWW | ncWW | cWW |
| 2 | IL_4CUV_040 | 4CUV | 0.5649 | 0 | 1 | 25S RRNA | G | 968 | C | 969 | A | 970 | * | U | 1111 | A | 1112 | G | 1113 | U | 1114 | cWW | ncWW | cWW |
| 3 | IL_2O3V_003 | 2O3V | 0.1428 | 2 | A+B | RNA (23-mer) | A | 15 | A | 17 | G | 19 | * | C | 30 | G | 31 | C | 32 | U | 33 | cWW | cSW | cWW |
| 4 | IL_3MEI_004 | 3MEI | 0.0000 | 2 | A+B | RNA (23-mer) | G | 13 | C | 15 | G | 17 | * | C | 7 | G | 8 | C | 9 | C | 10 | cWW | cSW | cWW |
| 5 | IL_4KR6_002 | 4KR6 | 0.5059 | 8 | D | RNA (39-MER) | U | 8 | U | 16 | G | 18 | * | C | 25 | A | 26 | A | 27 | G | 28 | cWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCC*GAGU | 1 |
| GCA*UAGU | 1 |
| AAAAG*CGCU | 1 |
| GCCUG*CGCC | 1 |
| UAGUGUCCUUG*CAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| C*AG | 2 |
| AAA*GC | 1 |
| CCU*GC | 1 |
| AGUGUCCUU*AA | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | > 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_07837.1 | Only in the parent motif |
|---|---|---|---|
| IL_62615.1 Compare | IL_3MEI_004, IL_2O3V_003 | IL_4CUV_040, IL_1VW3_022, IL_4KR6_002 | IL_3U5F_017, IL_4QCN_106 |
| IL_51342.1 Compare | IL_4CUV_040, IL_1VW3_022 | IL_3MEI_004, IL_2O3V_003, IL_4KR6_002 | IL_1VX2_016, IL_2FQN_002, IL_4QIK_001, IL_1VX2_082, IL_4A1B_070, IL_4N0T_004 |
| IL_14081.1 Compare | IL_4KR6_002 | IL_3MEI_004, IL_1VW3_022, IL_2O3V_003, IL_4CUV_040 | IL_2QBZ_002, IL_1VWW_066 |
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-cSW-R-cWW
- Heat map statistics
- Min 0.14 | Avg 0.43 | Max 0.77
Coloring options: