Motif IL_51342.1 Version IL_51342.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 3-5 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4A1B_070 | 4A1B | 0.6859 | 1 | 1 | LSU rRNA | G | 1648 | G | 1649 | U | 1650 | A | 1651 | * | U | 1843 | U | 1844 | C | 1846 | cWW | cWw | cWW | ||
| 2 | IL_2FQN_002 | 2FQN | 0.6363 | 2 | A+B | RNA (23-mer) | C | 7 | G | 8 | C | 9 | U | 10 | * | A | 38 | A | 39 | G | 42 | cWW | cWWa | cWW | ||
| 3 | IL_4QIK_001 | 4QIK | 0.6052 | 0 | D+C | RNA (23-mer) | U | 11 | G | 12 | U | 13 | G | 14 | * | C | 10 | U | 11 | G | 12 | cWW | cWw | cWW | ||
| 4 | IL_4CUV_040 | 4CUV | 0.3065 | 0 | 1 | LSU rRNA | U | 1111 | A | 1112 | G | 1113 | U | 1114 | * | G | 968 | C | 969 | A | 970 | cWW | ncWW | cWW | ||
| 5 | IL_1VW3_022 | 1VW3 | 0.0000 | 0 | A | LSU rRNA | G | 866 | A | 867 | G | 868 | U | 869 | * | G | 727 | C | 728 | C | 729 | cWW | ncWW | cWW | ||
| 6 | IL_4N0T_004 | 4N0T | 0.4517 | 0 | B | U6 snRNA | G | 78 | A | 79 | U | 80 | G | 81 | * | C | 66 | C | 67 | C | 68 | cWW | ncWW | cWW | cWW | |
| 7 | IL_1VX2_082 | 1VX2 | 0.6264 | 1 | 2 | SSU rRNA | G | 1780 | A | 1781 | G | 1782 | G | 1784 | * | C | 1750 | C | 1751 | C | 1752 | cWW | ncWWa | |||
| 8 | IL_1VX2_016 | 1VX2 | 0.7998 | 0 | 2 | SSU rRNA | C | 317 | A | 318 | C | 319 | G | 320 | * | C | 331 | G | 332 | G | 333 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUA*UUUC | 1 |
| CGCU*AAAAG | 1 |
| UGUG*CUG | 1 |
| GCA*UAGU | 1 |
| GAGU*GCC | 1 |
| GAUG*CCC | 1 |
| CCC*GAGCG | 1 |
| CACG*CGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GU*UU | 1 |
| GC*AAA | 1 |
| GU*U | 1 |
| C*AG | 1 |
| AG*C | 1 |
| AU*C | 1 |
| C*AGC | 1 |
| AC*G | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | > 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_51342.1 | Only in the parent motif |
|---|---|---|---|
| IL_59745.1 Compare | IL_4CUV_040, IL_1VW3_022 | IL_1VX2_016, IL_2FQN_002, IL_4QIK_001, IL_1VX2_082, IL_4A1B_070, IL_4N0T_004 | IL_3MEI_004, IL_2O3V_003, IL_4NVV_035, IL_4KR6_002 |
| IL_19493.1 Compare | IL_4A1B_070 | IL_4CUV_040, IL_2FQN_002, IL_4QIK_001, IL_1VX2_082, IL_1VX2_016, IL_1VW3_022, IL_4N0T_004 | IL_1NUV_002, IL_429D_002, IL_2QBG_108 |
| IL_90133.5 Compare | IL_4N0T_004 | IL_4CUV_040, IL_2FQN_002, IL_4QIK_001, IL_1VX2_082, IL_1VX2_016, IL_1VW3_022, IL_4A1B_070 | IL_4CUX_005, IL_4BPP_066, IL_3U5F_028, IL_2AW7_006, IL_3U5F_068 |
| IL_69106.3 Compare | IL_2FQN_002 | IL_4CUV_040, IL_4QIK_001, IL_1VX2_082, IL_1VX2_016, IL_1VW3_022, IL_4A1B_070, IL_4N0T_004 | IL_3U5F_017 |
Children motifs
| Child motif | Common motif instances | Only in IL_51342.1 | Only in the child motif |
|---|---|---|---|
| IL_74753.1 Compare | IL_2FQN_002, IL_4QIK_001, IL_4A1B_070 | IL_1VX2_016, IL_1VW3_022, IL_1VX2_082, IL_4CUV_040, IL_4N0T_004 | IL_1NUV_002, IL_429D_002, IL_1NUV_003 |
| IL_07837.1 Compare | IL_4CUV_040, IL_1VW3_022 | IL_1VX2_016, IL_2FQN_002, IL_4QIK_001, IL_1VX2_082, IL_4A1B_070, IL_4N0T_004 | IL_3MEI_004, IL_2O3V_003, IL_4KR6_002 |
| IL_75951.1 Compare | IL_4N0T_004 | IL_1VX2_016, IL_2FQN_002, IL_4QIK_001, IL_1VX2_082, IL_4CUV_040, IL_1VW3_022, IL_4A1B_070 | IL_3U5F_017, IL_2QBG_108 |
- Annotations
-
- (8)
- Basepair signature
- cWW-L-cWW-cWW
- Heat map statistics
- Min 0.27 | Avg 0.56 | Max 0.91
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