Motif IL_14081.1 Version IL_14081.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 1-7 | 2-5 | 2-6 | 3-4 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4KR6_002 | 4KR6 | 0.8184 | 8 | D | RNA (39-MER) | U | 8 | U | 16 | G | 18 | * | C | 25 | A | 26 | A | 27 | G | 28 | cWW | ncWW | cWW | |
| 2 | IL_1VWW_066 | 1VWW | 0.0000 | 1 | 5 | LSU rRNA | C | 1686 | U | 1687 | G | 1688 | * | C | 1848 | U | 1849 | A | 1850 | G | 1851 | ncWW | ncWw | ncWW | |
| 3 | IL_2QBZ_002 | 2QBZ | 0.9479 | 1 | X | M-box riboswitch (ykoK leader) | U | 23 | A | 25 | G | 26 | * | U | 159 | C | 160 | U | 161 | A | 162 | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAGUGUCCUUG*CAAG | 1 |
| CCC*GUGAG | 1 |
| UUAG*UCUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGUGUCCUU*AA | 1 |
| C*UGA | 1 |
| UA*CU | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_14081.1 | Only in the parent motif |
|---|---|---|---|
| IL_59745.1 Compare | IL_4KR6_002 | IL_2QBZ_002, IL_1VWW_066 | IL_4NVV_035, IL_3MEI_004, IL_1VW3_022, IL_2O3V_003, IL_4CUV_040 |
| IL_20775.1 Compare | IL_2QBZ_002 | IL_4KR6_002, IL_1VWW_066 |
Children motifs
| Child motif | Common motif instances | Only in IL_14081.1 | Only in the child motif |
|---|---|---|---|
| IL_07837.1 Compare | IL_4KR6_002 | IL_2QBZ_002, IL_1VWW_066 | IL_3MEI_004, IL_1VW3_022, IL_2O3V_003, IL_4CUV_040 |
| IL_27536.1 Compare | IL_2QBZ_002 | IL_4KR6_002, IL_1VWW_066 | IL_1VW3_014 |
- Annotations
-
- (3)
- Basepair signature
- cWW-L-R-R-cWW
- Heat map statistics
- Min 0.82 | Avg 0.61 | Max 0.97
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