Motif IL_07931.4 Version IL_07931.4 of this group appears in releases 3.33 to 3.61
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-3 | 2-6 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4LFB_064 | 4LFB | 0.6403 | 2 | A | SSU rRNA | C | 1440 | G | 1441 | G | 1442 | G | 1447 | * | C | 1459 | A | 1460 | G | 1461 | cWW | tSH | cWW | |||
| 2 | IL_6CZR_136 | 6CZR | 0.0000 | 0 | 1a | SSU rRNA | G | 578 | G | 579 | C | 580 | G | 581 | * | C | 627 | G | 628 | C | 629 | cWW | ntSH | ncWW | cWW | ||
| 3 | IL_5TBW_105 | 5TBW | 0.6037 | 1 | Major groove minor groove platform with extra cWW | 1 | LSU rRNA | U | 2858 | U | 2859 | U | 2861 | U | 2862 | * | G | 2828 | U | 2829 | G | 2830 | cWW | ncWH | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGGAG*CAG | 1 |
| GGCG*CGC | 1 |
| UUUUU*GUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGGA*A | 1 |
| GC*G | 1 |
| UUU*U | 1 |
Release history
| Release | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Major groove minor groove platform with extra cWW (1)
- Basepair signature
- cWW-tSH-cWW-cWW
- Heat map statistics
- Min 0.60 | Avg 0.48 | Max 0.93
Coloring options: