Motif IL_07931.5 Version IL_07931.5 of this group appears in releases 3.62 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 1-7 | 2-5 | 2-6 | 3-4 | 5-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4KR6_002 | 4KR6 | 0.8057 | 8 | D | RNA (39-MER) | U | 8 | U | 16 | G | 18 | * | C | 25 | A | 26 | A | 27 | G | 28 | cWW | ncWW | cWW | |||
| 2 | IL_5TBW_105 | 5TBW | 0.0000 | 1 | Major groove minor groove platform with extra cWW | 1 | LSU rRNA | G | 2828 | U | 2829 | G | 2830 | * | U | 2858 | U | 2859 | U | 2861 | U | 2862 | cWW | cwW | cWW | ncWH | |
| 3 | IL_6CZR_136 | 6CZR | 0.6037 | 0 | 1a | SSU rRNA | C | 627 | G | 628 | C | 629 | * | G | 578 | G | 579 | C | 580 | G | 581 | cWW | ntHS | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAGUGUCCUUG*CAAG | 1 |
| GUG*UUUUU | 1 |
| CGC*GGCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGUGUCCUU*AA | 1 |
| U*UUU | 1 |
| G*GC | 1 |
Release history
| Release | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Major groove minor groove platform with extra cWW (1)
- Basepair signature
- cWW-cWW-R-cWW
- Heat map statistics
- Min 0.60 | Avg 0.52 | Max 0.93
Coloring options: