Motif IL_08257.1 Version IL_08257.1 of this group appears in releases 3.88 to 3.88

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9		10	1-10	2-9	3-8	4-7	5-6
1	IL_7A0S_056	7A0S	0.3737	Triple sheared	X	LSU rRNA	C	1529	U	1530	C	1531	A	1532	G	1533	*	C	1491	A	1492	A	1493	G	1494	G	1495	cWW			tHS	ncWW
2	IL_7A0S_070	7A0S	0.3619	Triple sheared	X	LSU rRNA	U	1848	G	1849	G	1850	A	1851	G	1852	*	C	1865	G	1866	A	1867	A	1868	A	1869	cWW	tSH		ntHS	cWW
3	IL_2A64_006	2A64	0.2982	Triple sheared	A	ribonuclease P RNA	C	347	G	348	G	349	A	350	G	351	*	C	378	G	379	A	380	A	381	G	382	cWW	tSH	tSH		cWW
4	IL_2A64_005	2A64	0.2349	Triple sheared	A	ribonuclease P RNA	C	297	G	298	G	299	A	300	G	301	*	C	284	G	285	A	286	A	287	G	288	cWW	tSH	ntSH	tHS	cWW
5	IL_8C3A_480	8C3A	0.2330	Triple sheared	CM	SSU rRNA	C	1665	G	1666	G	1667	A	1668	U	1669	*	A	1706	G	1707	A	1708	A	1709	G	1710	cWW	tSH	ntSH	ntWS	cWW
6	IL_4V88_474	4V88	0.2219	Triple sheared	A6	SSU rRNA	A	1678	G	1679	G	1680	A	1681	U	1682	*	A	1719	G	1720	A	1721	A	1722	U	1723	cWW	tSH	tSH		cWW
7	IL_4WFL_001	4WFL	0.0000	Triple sheared	A	LSRP RNA	U	72	C	73	G	74	A	75	G	76	*	C	91	G	92	A	93	C	94	A	95	cWW	cWB	tSH	tHS	cWW
8	IL_5J7L_274	5J7L	0.1420	Triple sheared	DA	LSU rRNA	G	875	C	876	A	877	A	878	G	879	*	C	898	A	899	A	900	C	901	C	902	cWW	cWB	ntSH	tHS	cWW
9	IL_5J7L_056	5J7L	0.3361	Triple sheared	AA	SSU rRNA	G	1272	C	1273	A	1274	A	1275	G	1276	*	C	1259	G	1260	A	1261	C	1262	C	1263	cWW	ncWB	tSH	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGGAG*CGAAG	2
CUCAG*CAAGG	1
UGGAG*CGAAA	1
CGGAU*AGAAG	1
AGGAU*AGAAU	1
UCGAG*CGACA	1
GCAAG*CAACC	1
GCAAG*CGACC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GGA*GAA	5
UCA*AAG	1
CGA*GAC	1
CAA*AAC	1
CAA*GAC	1

Release history

Release	3.88
Date	2024-09-11
Status	New id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Triple sheared (9)
Basepair signature: cWW-L-R-tSH-tHS-cWW
Heat map statistics: Min 0.12 | Avg 0.28 | Max 0.46

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