RNA 3D Hub //

Motif IL_08296.5 Version IL_08296.5 of this group appears in releases 3.91 to 3.94

#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5break 6 7 81-82-34-75-6
1 IL_7A0S_0967A0S0.15332X LSU rRNAG2698G2699U2700A2701G2702*U2666C2667C2670cWWncSHntHScWW
2 IL_4WF9_1024WF90.00002X LSU rRNAG2745G2746U2747A2748G2749*U2714G2715C2718cWWtHScWW
3 IL_5J7L_3485J7L0.10562DA LSU rRNAG2718G2719U2720A2721G2722*U2687G2688C2691cWWtHScWW
4 IL_9DFE_1049DFE0.117621A LSU rRNAG2718G2719U2720A2721G2722*U2687U2688C2691cWWtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
GGUAG*UCUCC1
GGUAG*UGUAC1
GGUAG*UGUUC1
GGUAG*UUUCC1
Non-Watson-Crick part of the motif
SequenceCounts
GUA*CUC1
GUA*GUA1
GUA*GUU1
GUA*UUC1

Release history

Release3.913.923.933.94
Date2024-12-042025-01-012025-01-292025-02-26
StatusUpdated, 1 parentExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (4)
    • Basepair signature
    cWW-L-tHS-L-cWW
    Heat map statistics
    Min 0.11 | Avg 0.10 | Max 0.18
    Help

    Coloring options:

    IL_7A0S_096:IL_7A0S_096 = 0IL_7A0S_096:IL_4WF9_102 = 0.1533IL_7A0S_096:IL_5J7L_348 = 0.1757IL_7A0S_096:IL_9DFE_104 = 0.167IL_4WF9_102:IL_7A0S_096 = 0.1533IL_4WF9_102:IL_4WF9_102 = 0IL_4WF9_102:IL_5J7L_348 = 0.1056IL_4WF9_102:IL_9DFE_104 = 0.1176IL_5J7L_348:IL_7A0S_096 = 0.1757IL_5J7L_348:IL_4WF9_102 = 0.1056IL_5J7L_348:IL_5J7L_348 = 0IL_5J7L_348:IL_9DFE_104 = 0.1173IL_9DFE_104:IL_7A0S_096 = 0.167IL_9DFE_104:IL_4WF9_102 = 0.1176IL_9DFE_104:IL_5J7L_348 = 0.1173IL_9DFE_104:IL_9DFE_104 = 0IL_7A0S_096IL_4WF9_102IL_5J7L_348IL_9DFE_104Discrepancy0.000.050.100.15
    Copyright 2025 BGSU RNA group. Page generated in 1.5077 s