Motif IL_09768.1 Version IL_09768.1 of this group appears in releases 3.62 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-5 | 2-7 | 3-4 | 3-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V88_451 | 4V88 | 0.9443 | 2 | Minor groove platform with extra cWW | A6 | SSU rRNA | U | 1276 | G | 1277 | G | 1278 | * | U | 1430 | C | 1431 | G | 1433 | U | 1434 | A | 1436 | cWW | ncWWa | cWW | tSH | |
| 2 | IL_4LFB_064 | 4LFB | 0.0000 | 1 | A | SSU rRNA | C | 1459 | A | 1460 | G | 1461 | * | C | 1440 | G | 1441 | G | 1442 | A | 1446 | G | 1447 | cWW | tHS | cWW | |||
| 3 | IL_1MFQ_006 | 1MFQ | 0.9589 | 4 | A | SRP RNA | C | 212 | A | 215 | A | 216 | * | U | 181 | G | 182 | A | 183 | C | 186 | G | 187 | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGG*UCUGUGA | 1 |
| CAG*CGGGAG | 1 |
| CAAAA*UGAACCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*CUGUG | 1 |
| A*GGGA | 1 |
| AAA*GAACC | 1 |
Release history
| Release | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Minor groove platform with extra cWW (1)
- Basepair signature
- cWW-R-tHS-tSH-cWW
- Heat map statistics
- Min 0.94 | Avg 0.64 | Max 0.99
Coloring options: