Motif IL_09818.1 Version IL_09818.1 of this group appears in releases 3.2 to 3.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | break | 3 | 4 | 5 | 1-4 | 1-5 | 2-3 | 4-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V8P_272 | 4V8P | 0.3647 | 1 | Major groove platform with intercalation (H) | D1 | U | 2879 | U | 2880 | * | A | 2897 | A | 2898 | G | 2900 | ntHS | cWW | cWW | |
| 2 | IL_4V9F_089 | 4V9F | 0.1490 | 1 | Major groove platform with intercalation | 0 | U | 2557 | G | 2558 | * | C | 2575 | A | 2576 | G | 2578 | ntHS | cWW | cWW | |
| 3 | IL_5J7L_342 | 5J7L | 0.0000 | 1 | Major groove platform with intercalation | DA | U | 2522 | G | 2523 | * | C | 2540 | A | 2541 | G | 2543 | ntHS | cWW | cWW | |
| 4 | IL_4Y4O_274 | 4Y4O | 0.0833 | 1 | Major groove platform with intercalation (H) | 2A | U | 2522 | G | 2523 | * | C | 2540 | A | 2541 | G | 2543 | ntHS | cWW | cWW | |
| 5 | IL_4WF9_097 | 4WF9 | 0.0892 | 1 | Major groove platform with intercalation | X | U | 2549 | G | 2550 | * | C | 2567 | A | 2568 | G | 2570 | ntHS | cWW | cWW | |
| 6 | IL_4IOA_093 | 4IOA | 0.1020 | 1 | Major groove platform with intercalation (H) | X | U | 2501 | G | 2502 | * | C | 2519 | A | 2520 | G | 2522 | ntHS | cWW | cWW | |
| 7 | IL_4KQY_009 | 4KQY | 0.3888 | 1 | Minor groove platform | A | C | 49||||4_555 | G | 50||||4_555 | * | C | 73||||4_555 | A | 74||||4_555 | G | 76||||4_555 | cWW | cWW | ncSH | |
| 8 | IL_4KQY_004 | 4KQY | 0.3888 | 1 | Minor groove platform | A | C | 49 | G | 50 | * | C | 73 | A | 74 | G | 76 | cWW | cWW | ncSH | |
| 9 | IL_4C7O_002 | 4C7O | 0.8595 | 0 | Single stack bend | E | C | 8 | U | 9 | * | A | 36 | U | 37 | G | 38 | cWW | cWW | ||
| 10 | IL_4V8P_227 | 4V8P | 0.8807 | 0 | D1 | G | 1849 | C | 1850 | * | G | 1643 | A | 1644 | C | 1645 | cWW | cWW | |||
| 11 | IL_3WBM_004 | 3WBM | 0.9930 | 0 | Other IL | X+Y | U | 23 | C | 24 | * | G | 2 | U | 3 | A | 4 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UG*CAAG | 5 |
| CG*CAAG | 2 |
| UU*AACG | 1 |
| CU*AUG | 1 |
| GC*GAC | 1 |
| UC*GUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AA | 7 |
| *U | 2 |
| *AC | 1 |
| *A | 1 |
Release history
| Release | 3.2 |
|---|---|
| Date | 2018-09-26 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove platform with intercalation (H) (3)
- Major groove platform with intercalation (3)
- Minor groove platform (2)
- Other IL (1)
- Single stack bend (1)
- (1)
- Basepair signature
- cWW-tHS-cWW
- Heat map statistics
- Min 0.08 | Avg 0.51 | Max 1.00
Coloring options: