Motif IL_10207.1 Version IL_10207.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-5 | 2-12 | 6-9 | 6-12 | 7-8 | 7-11 | 8-10 | 9-11 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_102 | 4V9F | 0.0000 | 1 | Minor groove platform related | 9 | 5S rRNA | G | 21 | G | 22 | U | 23 | G | 25 | C | 26 | C | 27 | U | 28 | * | A | 54 | U | 55 | A | 56 | A | 57 | G | 58 | C | 59 | cWW | tSW | ncWB | cWW | cSW | cWW | cSW | ncSH | ncSH |
| 2 | IL_5TBW_373 | 5TBW | 0.7239 | 0 | Minor groove platform related | AS | 5S rRNA | G | 21 | A | 22 | A | 23 | A | 24 | G | 25 | C | 26 | A | 27 | * | U | 53 | U | 54 | A | 55 | A | 56 | G | 57 | C | 58 | cWW | ncWW | cSW | cWW | cSW | ncSH | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUUGCCU*AUAAGC | 1 |
| GAAAGCA*UUAAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUUGCC*UAAG | 1 |
| AAAGC*UAAG | 1 |
- Annotations
-
- Minor groove platform related (2)
- Basepair signature
- cWW-L-R-L-L-R-L-cWW-cSW-cWW-cSH
- Heat map statistics
- Min 0.72 | Avg 0.36 | Max 0.72
Coloring options: