Motif IL_10804.1 Version IL_10804.1 of this group appears in releases 0.6 to 0.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3G78_005 | 3G78 | 0.9489 | 2 | A | Group II catalytic intron D1-D4-3 | G | 128 | G | 129 | * | U | 234 | G | 236 | U | 238 | cWW | cWW | ||
| 2 | IL_3RW6_003 | 3RW6 | 0.0000 | 1 | Minor groove platform | H | constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA | A | 20 | G | 21 | * | U | 38 | A | 40 | U | 41 | cWW | cWW | tSH |
| 3 | IL_3RW6_007 | 3RW6 | 0.0528 | 1 | F | constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA | A | 20 | G | 21 | * | U | 38 | A | 40 | U | 41 | cWW | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AG*UAAU | 2 |
| GG*UUGAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AA | 2 |
| *UGA | 1 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2012-04-02 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_10804.1 | Only in the parent motif |
|---|---|---|---|
| IL_99637.1 Compare | IL_3G78_005 | IL_3RW6_007, IL_3RW6_003 | IL_3O58_038 |
Children motifs
| Child motif | Common motif instances | Only in IL_10804.1 | Only in the child motif |
|---|---|---|---|
| IL_14023.1 Compare | IL_3RW6_003 | IL_3RW6_007, IL_3G78_005 | IL_3U5F_073 |
| IL_12068.1 Compare | IL_3G78_005 | IL_3RW6_007, IL_3RW6_003 | IL_2XZM_026 |
- Annotations
-
- (2)
- Minor groove platform (1)
- Basepair signature
- 05_cWW-cWW,tSH
- Heat map statistics
- Min 0.05 | Avg 0.43 | Max 0.95
Coloring options: