Motif IL_11389.1 Version IL_11389.1 of this group appears in releases 3.88 to 3.88

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5	1-5	3-4
1	IL_7A0S_083	7A0S	0.4305	Single stack bend	X	LSU rRNA	C	2477	C	2478	U	2479	*	A	2432	G	2433	cWW	cWW
2	IL_8VTW_090	8VTW	0.4473	Single stack bend (H)	1A	LSU rRNA	C	2498	C	2499	U	2500	*	A	2453	G	2454	cWW	cWW
3	IL_4WF9_089	4WF9	0.4220	Single stack bend	X	LSU rRNA	C	2525	C	2526	U	2527	*	A	2480	G	2481	cWW	cWW
4	IL_5J7L_391	5J7L	0.3053	Single stack bend	DA	LSU rRNA	OMC	2498	C	2499	U	2500	*	A	2453	G	2454	cWW	cWW
5	IL_8C3A_038	8C3A	0.3367	Single stack bend (H)	1	LSU rRNA	U	1107	A	1108	G	1109	*	C	965	A	966	cWW	cWW
6	IL_5TBW_035	5TBW	0.3465	Single stack bend	1	LSU rRNA	U	1111	A	1112	G	1113	*	C	969	A	970	cWW	cWW
7	IL_4V9F_005	4V9F	0.2036	Single stack bend	0	LSU rRNA	G	182	A	183	G	184	*	C	153	C	154	cWW	cWW
8	IL_5TBW_004	5TBW	0.1933	Single stack bend	1	LSU rRNA	G	56	A	57	G	58	*	C	27	C	28	cWW	cWW
9	IL_8C3A_004	8C3A	0.1516	Single stack bend (H)	1	LSU rRNA	G	55	A	56	G	57	*	C	26	C	27	cWW	ncWW
10	IL_4WF9_007	4WF9	0.0000	Single stack bend	X	LSU rRNA	G	215	A	216	G	217	*	C	186	C	187	cWW	cWW
11	IL_5J7L_249	5J7L	0.1261	Single stack bend	DA	LSU rRNA	G	212	A	213	G	214	*	C	183	C	184	cWW	cWW
12	IL_7A0S_005	7A0S	0.1476	Single stack bend	X	LSU rRNA	A	189	A	190	G	191	*	C	160	U	161	cWW	cWW
13	IL_7MLX_001	7MLX	0.1290	Single stack bend	R	RNA (65-MER)	G	48	A	49	U	50	*	A	37	C	38	cWW	cWW
14	IL_8VTW_005	8VTW	0.1656	Single stack bend (H)	1A	LSU rRNA	G	212	A	213	G	214	*	C	183	C	184	cWW	cWW
15	IL_5J7L_266	5J7L	0.2404	Single stack bend	DA	LSU rRNA	G	940	A	941	G	942	*	C	837	C	838	cWW	ncWW
16	IL_8VTW_023	8VTW	0.2430	Single stack bend (H)	1A	LSU rRNA	G	940	A	941	G	942	*	C	837	C	838	cWW	cWW
17	IL_4WF9_028	4WF9	0.2999	Single stack bend	X	LSU rRNA	G	984	A	985	G	986	*	C	882	C	883	cWW	cWW
18	IL_7A0S_022	7A0S	0.2644	Single stack bend	X	LSU rRNA	G	951	A	952	G	953	*	C	850	C	851	cWW	cWW
19	IL_5IBB_340	5IBB	0.2997	Single base bend	1L	tRNA	G	63	U	64	C	65	*	G	50	C	51	cWW	cWW
20	IL_3MOJ_004	3MOJ	0.4225	Single stack bend	A	LSU rRNA	C	2540	A	2541	A	2542	*	U	2522	G	2523	cWW	cWW
21	IL_6FZ0_001	6FZ0	0.3977	Single stack bend	A	SAM-V riboswitch	C	46	U	47	A	48	*	U	20	G	21	cWW	cWW
22	IL_2QWY_008	2QWY	0.4088	Single stack bend	C	SAM-II riboswitch	C	43	U	44	A	45	*	U	21	G	22	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAG*CC	10
CCU*AG	3
UAG*CA	2
CUA*UG	2
(OMC)CU*AG	1
AAG*CU	1
GAU*AC	1
GUC*GC	1
CAA*UG	1

Non-Watson-Crick part of the motif

Sequence	Counts
A*	15
C*	4
U*	3

Release history

Release	3.88
Date	2024-09-11
Status	New id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Single stack bend (16)
Single stack bend (H) (5)
Single base bend (1)
Basepair signature: cWW-L-cWW
Heat map statistics: Min 0.08 | Avg 0.36 | Max 0.74

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