Motif IL_11389.1 Version IL_11389.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 3-4 | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_7A0S_083 | 7A0S | 0.4305 | 0 | Single stack bend | X | LSU rRNA | C | 2477 | C | 2478 | U | 2479 | * | A | 2432 | G | 2433 | cWW | cWW |
2 | IL_8VTW_090 | 8VTW | 0.4473 | 0 | Single stack bend (H) | 1A | LSU rRNA | C | 2498 | C | 2499 | U | 2500 | * | A | 2453 | G | 2454 | cWW | cWW |
3 | IL_4WF9_089 | 4WF9 | 0.4220 | 0 | Single stack bend | X | LSU rRNA | C | 2525 | C | 2526 | U | 2527 | * | A | 2480 | G | 2481 | cWW | cWW |
4 | IL_5J7L_391 | 5J7L | 0.3053 | 0 | DA | LSU rRNA | OMC | 2498 | C | 2499 | U | 2500 | * | A | 2453 | G | 2454 | cWW | cWW | |
5 | IL_8C3A_038 | 8C3A | 0.3367 | 0 | Single stack bend (H) | 1 | LSU rRNA | U | 1107 | A | 1108 | G | 1109 | * | C | 965 | A | 966 | cWW | cWW |
6 | IL_5TBW_035 | 5TBW | 0.3465 | 0 | Single stack bend | 1 | LSU rRNA | U | 1111 | A | 1112 | G | 1113 | * | C | 969 | A | 970 | cWW | cWW |
7 | IL_4V9F_005 | 4V9F | 0.2036 | 0 | Single stack bend | 0 | LSU rRNA | G | 182 | A | 183 | G | 184 | * | C | 153 | C | 154 | cWW | cWW |
8 | IL_5TBW_004 | 5TBW | 0.1933 | 0 | Single stack bend | 1 | LSU rRNA | G | 56 | A | 57 | G | 58 | * | C | 27 | C | 28 | cWW | cWW |
9 | IL_8C3A_004 | 8C3A | 0.1516 | 0 | Single stack bend (H) | 1 | LSU rRNA | G | 55 | A | 56 | G | 57 | * | C | 26 | C | 27 | cWW | ncWW |
10 | IL_4WF9_007 | 4WF9 | 0.0000 | 0 | Single stack bend | X | LSU rRNA | G | 215 | A | 216 | G | 217 | * | C | 186 | C | 187 | cWW | cWW |
11 | IL_5J7L_249 | 5J7L | 0.1261 | 0 | Single stack bend | DA | LSU rRNA | G | 212 | A | 213 | G | 214 | * | C | 183 | C | 184 | cWW | cWW |
12 | IL_7A0S_005 | 7A0S | 0.1476 | 0 | Single stack bend | X | LSU rRNA | A | 189 | A | 190 | G | 191 | * | C | 160 | U | 161 | cWW | cWW |
13 | IL_7MLX_001 | 7MLX | 0.1290 | 0 | R | RNA (65-MER) | G | 48 | A | 49 | U | 50 | * | A | 37 | C | 38 | cWW | cWW | |
14 | IL_8VTW_005 | 8VTW | 0.1656 | 0 | Single stack bend (H) | 1A | LSU rRNA | G | 212 | A | 213 | G | 214 | * | C | 183 | C | 184 | cWW | cWW |
15 | IL_5J7L_266 | 5J7L | 0.2404 | 0 | Single stack bend | DA | LSU rRNA | G | 940 | A | 941 | G | 942 | * | C | 837 | C | 838 | cWW | ncWW |
16 | IL_8VTW_023 | 8VTW | 0.2430 | 0 | Single stack bend (H) | 1A | LSU rRNA | G | 940 | A | 941 | G | 942 | * | C | 837 | C | 838 | cWW | cWW |
17 | IL_4WF9_028 | 4WF9 | 0.2999 | 0 | Single stack bend | X | LSU rRNA | G | 984 | A | 985 | G | 986 | * | C | 882 | C | 883 | cWW | cWW |
18 | IL_7A0S_022 | 7A0S | 0.2644 | 0 | Single stack bend | X | LSU rRNA | G | 951 | A | 952 | G | 953 | * | C | 850 | C | 851 | cWW | cWW |
19 | IL_5IBB_340 | 5IBB | 0.2997 | 0 | Single base bend | 1L | tRNA | G | 63 | U | 64 | C | 65 | * | G | 50 | C | 51 | cWW | cWW |
20 | IL_3MOJ_004 | 3MOJ | 0.4225 | 0 | Single stack bend | A | LSU rRNA | C | 2540 | A | 2541 | A | 2542 | * | U | 2522 | G | 2523 | cWW | cWW |
21 | IL_6FZ0_001 | 6FZ0 | 0.3977 | 0 | Single stack bend | A | SAM-V riboswitch | C | 46 | U | 47 | A | 48 | * | U | 20 | G | 21 | cWW | cWW |
22 | IL_2QWY_008 | 2QWY | 0.4088 | 0 | Single stack bend | C | SAM-II riboswitch | C | 43 | U | 44 | A | 45 | * | U | 21 | G | 22 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GAG*CC | 10 |
CCU*AG | 3 |
UAG*CA | 2 |
CUA*UG | 2 |
(OMC)CU*AG | 1 |
AAG*CU | 1 |
GAU*AC | 1 |
GUC*GC | 1 |
CAA*UG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
A* | 15 |
C* | 4 |
U* | 3 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Single stack bend (14)
- Single stack bend (H) (5)
- (2)
- Single base bend (1)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.08 | Avg 0.36 | Max 0.74
Coloring options: