Motif IL_12211.3 Version IL_12211.3 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-5 | 2-12 | 6-9 | 6-12 | 7-8 | 7-11 | 8-10 | 9-11 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5H_144 | 3U5H | 0.1012 | 0 | 7 | 5S rRNA | G | 21 | A | 22 | A | 23 | A | 24 | G | 25 | C | 26 | A | 27 | * | U | 53 | U | 54 | A | 55 | A | 56 | G | 57 | C | 58 | cWW | cWW | cSW | cWW | ncSW | ncSH | ncSH | |||
| 2 | IL_4CUV_151 | 4CUV | 0.0000 | 0 | 3 | 5S RRNA | G | 21 | A | 22 | A | 23 | A | 24 | G | 25 | C | 26 | A | 27 | * | U | 53 | U | 54 | A | 55 | A | 56 | G | 57 | C | 58 | cWW | ncWW | ncSW | cWW | ncSW | ncSH | ||||
| 3 | IL_1VX6_141 | 1VX6 | 0.8656 | 0 | B | 5S ribosomal RNA | G | 21 | G | 22 | A | 23 | U | 24 | A | 25 | C | 26 | A | 27 | * | U | 52 | U | 53 | A | 54 | A | 55 | G | 56 | C | 57 | cWW | ntSW | cWB | ncSW | cWW | ncSW | ncSH | |||
| 4 | IL_1S72_100 | 1S72 | 1.2860 | 1 | Minor groove platform related (H) | 9 | 5S rRNA | G | 21 | G | 22 | U | 24 | G | 25 | C | 26 | C | 27 | U | 28 | * | A | 54 | U | 55 | A | 56 | A | 57 | G | 58 | C | 59 | cWW | ntSW | ncWB | cWW | cSW | cWW | ntSW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAAGCA*UUAAGC | 2 |
| GGAUACA*UUAAGC | 1 |
| GGUUGCCU*AUAAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAAGC*UAAG | 2 |
| GAUAC*UAAG | 1 |
| GUUGCC*UAAG | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_12211.3 | Only in the parent motif |
|---|---|---|---|
| IL_12211.2 Compare | IL_4CUV_151, IL_1S72_100, IL_3U5H_144 | IL_1VX6_141 |
Children motifs
| Child motif | Common motif instances | Only in IL_12211.3 | Only in the child motif |
|---|---|---|---|
| IL_12211.4 Compare | IL_4CUV_151, IL_1S72_100, IL_3U5H_144, IL_1VX6_141 | IL_4W21_170 |
- Annotations
-
- (3)
- Minor groove platform related (H) (1)
- Basepair signature
- cWW-L-R-R-R-L-L-L-cWW-cWW
- Heat map statistics
- Min 0.10 | Avg 0.66 | Max 1.31
Coloring options: