Motif IL_12211.2 Version IL_12211.2 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-4 | 2-11 | 5-8 | 5-11 | 6-7 | 6-10 | 7-9 | 8-10 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1S72_100 | 1S72 | 0.7400 | 2 | Minor groove platform related (H) | 9 | G | 21 | G | 22 | G | 25 | C | 26 | C | 27 | U | 28 | * | A | 54 | U | 55 | A | 56 | A | 57 | G | 58 | C | 59 | cWW | ntSW | ncWB | cWW | cSW | cWW | ntSW | ncSH | |
| 2 | IL_3U5H_144 | 3U5H | 0.0000 | 1 | 7 | G | 21 | A | 23 | A | 24 | G | 25 | C | 26 | A | 27 | * | U | 53 | U | 54 | A | 55 | A | 56 | G | 57 | C | 58 | cWW | cWW | cSW | cWW | ncSW | ncSH | ncSH | |||
| 3 | IL_4CUV_151 | 4CUV | 0.1052 | 1 | 3 | G | 21 | A | 23 | A | 24 | G | 25 | C | 26 | A | 27 | * | U | 53 | U | 54 | A | 55 | A | 56 | G | 57 | C | 58 | cWW | ncWW | ncSW | cWW | ncSW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAAGCA*UUAAGC | 2 |
| GGUUGCCU*AUAAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAAGC*UAAG | 2 |
| GUUGCC*UAAG | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_12211.2 | Only in the parent motif |
|---|---|---|---|
| IL_12211.1 Compare | IL_1S72_100, IL_3U5H_144 | IL_4CUV_151 |
Children motifs
| Child motif | Common motif instances | Only in IL_12211.2 | Only in the child motif |
|---|---|---|---|
| IL_12211.3 Compare | IL_4CUV_151, IL_1S72_100, IL_3U5H_144 | IL_1VX6_141 |
- Annotations
-
- (2)
- Minor groove platform related (H) (1)
- Basepair signature
- cWW-L-R-R-R-L-L-cWW-cWW
- Heat map statistics
- Min 0.11 | Avg 0.35 | Max 0.75
Coloring options: