#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 41-42-3
1 IL_1S72_0311S720.10544Multiple bulged bases (H)0 LSU rRNAG868G870*C880C884cWWcWW
2 IL_3V2F_0233V2F0.09444A23S Ribosomal RNAG775A777*U787C791cWWcWW
3 IL_2QBG_0262QBG0.00004B23S rRNAG775G777*C787C791cWWcWW
4 IL_4IOA_0204IOA0.10964Multiple bulged bases (H)X LSU rRNAG788A790*U800C804cWWcWW
5 IL_4A1B_0404A1B0.18604126S RRNAG932G934*U944C948cWWcWW
6 IL_3U5H_0353U5H0.17124525S rRNAG907G909*U919C923cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GGA*UAACC2
GGG*UAAUC2
GGG*CCAUC1
GGG*CAAUC1
Non-Watson-Crick part of the motif
SequenceCounts
G*AAU3
G*AAC2
G*CAU1

Release history

Release1.11.21.31.41.51.61.71.81.91.101.111.121.13
Date2013-04-082013-05-042013-06-012013-07-012013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-29
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_13069.3Only in the parent motif
IL_13069.2
Compare
IL_4A1B_040, IL_3U5H_035, IL_2QBG_026, IL_1S72_031, IL_3V2F_023IL_4IOA_020IL_2ZJR_020

Children motifs

Child motifCommon motif instancesOnly in IL_13069.3Only in the child motif
IL_13069.4
Compare
IL_4A1B_040, IL_3U5H_035, IL_2QBG_026, IL_1S72_031, IL_4IOA_020IL_3V2F_023IL_4NVV_025
Annotations
  • (4)
  • Multiple bulged bases (H) (2)
  • Basepair signature
    cWW-cWW
    Heat map statistics
    Min 0.07 | Avg 0.13 | Max 0.25
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