Motif IL_13069.3 Version IL_13069.3 of this group appears in releases 1.1 to 1.13
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1S72_031 | 1S72 | 0.1054 | 4 | Multiple bulged bases (H) | 0 | LSU rRNA | G | 868 | G | 870 | * | C | 880 | C | 884 | cWW | cWW |
2 | IL_3V2F_023 | 3V2F | 0.0944 | 4 | A | 23S Ribosomal RNA | G | 775 | A | 777 | * | U | 787 | C | 791 | cWW | cWW | |
3 | IL_2QBG_026 | 2QBG | 0.0000 | 4 | B | 23S rRNA | G | 775 | G | 777 | * | C | 787 | C | 791 | cWW | cWW | |
4 | IL_4IOA_020 | 4IOA | 0.1096 | 4 | Multiple bulged bases (H) | X | LSU rRNA | G | 788 | A | 790 | * | U | 800 | C | 804 | cWW | cWW |
5 | IL_4A1B_040 | 4A1B | 0.1860 | 4 | 1 | 26S RRNA | G | 932 | G | 934 | * | U | 944 | C | 948 | cWW | cWW | |
6 | IL_3U5H_035 | 3U5H | 0.1712 | 4 | 5 | 25S rRNA | G | 907 | G | 909 | * | U | 919 | C | 923 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GGA*UAACC | 2 |
GGG*UAAUC | 2 |
GGG*CCAUC | 1 |
GGG*CAAUC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
G*AAU | 3 |
G*AAC | 2 |
G*CAU | 1 |
Release history
Release | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Date | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
Parent motif | Common motif instances | Only in IL_13069.3 | Only in the parent motif |
---|---|---|---|
IL_13069.2 Compare | IL_4A1B_040, IL_3U5H_035, IL_2QBG_026, IL_1S72_031, IL_3V2F_023 | IL_4IOA_020 | IL_2ZJR_020 |
Children motifs
Child motif | Common motif instances | Only in IL_13069.3 | Only in the child motif |
---|---|---|---|
IL_13069.4 Compare | IL_4A1B_040, IL_3U5H_035, IL_2QBG_026, IL_1S72_031, IL_4IOA_020 | IL_3V2F_023 | IL_4NVV_025 |
- Annotations
-
- (4)
- Multiple bulged bases (H) (2)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.07 | Avg 0.13 | Max 0.25
Coloring options: