Motif IL_13506.1 Version IL_13506.1 of this group appears in releases 3.18 to 3.24
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-7 | 2-8 | 3-6 | 4-5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3LOA_001 | 3LOA | 0.0000 | 0 | UAA/GAN variation | A+B | RNA (21-mer) + RNA (23-mer) | G | 1401 | C | 1402 | C | 1403 | C | 1404 | * | G | 1497 | U | 1498 | A | 1499 | A | 1500 | C | 1501 | cWW | ncWW | cWW | ||
| 2 | IL_4LFB_008 | 4LFB | 0.3815 | 0 | A | SSU rRNA | G | 227 | A | 228 | U | 229 | G | 230 | * | C | 132 | U | 133 | A | 134 | C | 135 | C | 136 | cWW | cWw | cWW | |||
| 3 | IL_1U6B_004 | 1U6B | 0.8754 | 0 | B | 197-MER | G | 119 | A | 120 | A | 121 | G | 122 | * | C | 96 | A | 97 | A | 98 | G | 99 | C | 100 | cWW | cWW | cWW | |||
| 4 | IL_1J2B_001 | 1J2B | 0.9415 | 0 | C | tRNA(Val) | C | 926 | G | 927 | C | 928 | C | 929 | * | G | 943 | G | 944 | A | 945 | G | 946 | G | 947 | cWW | cWW | ||||
| 5 | IL_5TBW_065 | 5TBW | 0.9015 | 1 | Multiple bulged bases with near cWW | 1 | LSU rRNA | G | 1623 | G | 1624 | A | 1625 | U | 1626 | * | G | 1817 | U | 1818 | U | 1819 | U | 1820 | C | 1822 | cWW | ncWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCCC*GUAAC | 1 |
| GAUG*CUACC | 1 |
| GAAG*CAAGC | 1 |
| CGCC*GGAGG | 1 |
| GGAU*GUUUUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CC*UAA | 1 |
| AU*UAC | 1 |
| AA*AAG | 1 |
| GC*GAG | 1 |
| GA*UUUU | 1 |
Release history
| Release | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 |
|---|---|---|---|---|---|---|---|
| Date | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- UAA/GAN variation (1)
- Multiple bulged bases with near cWW (1)
- Basepair signature
- cWW-L-R-R-cWW-cWW
- Heat map statistics
- Min 0.38 | Avg 0.65 | Max 0.96
Coloring options: