Motif IL_13921.1 Version IL_13921.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | 4-7 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8P9A_251 | 8P9A | 0.3045 | 0 | UAA/GAN (H) | AR | LSU rRNA | U | 741 | G | 742 | C | 743 | A | 744 | C | 745 | * | G | 725 | G | 726 | G | 727 | G | 728 | cWW | ntSH | tHS | cWW | |
| 2 | IL_8XZL_001 | 8XZL | 0.2745 | 0 | A | RNA (53-MER) | U | 6 | G | 7 | U | 8 | A | 9 | C | 10 | * | G | 45 | G | 46 | A | 47 | G | 48 | cWW | tSH | tHS | cWW | ||
| 3 | IL_5J7L_303 | 5J7L | 0.2742 | 0 | UAA/GAN variation | DA | LSU rRNA | U | 1542 | G | 1543 | A | 1544 | A | 1545 | G | 1546 | * | C | 1526 | G | 1527 | A | 1528 | G | 1529 | cWW | ntSH | tHS | cWW | |
| 4 | IL_9DFE_059 | 9DFE | 0.2416 | 0 | 1A | LSU rRNA | A | 1469 | G | 1470 | A | 1471 | A | 1472 | G | 1473 | * | U | 1518 | G | 1519 | G | 1520 | U | 1523 | cWW | tHS | cWW | |||
| 5 | IL_4V9F_094 | 4V9F | 0.0000 | 1 | UAA/GAN | 0 | LSU rRNA | G | 2754 | G | 2755 | U | 2756 | A | 2757 | G | 2758 | * | U | 2724 | G | 2725 | A | 2727 | C | 2728 | cWW | tHS | cWW | ||
| 6 | IL_2R8S_006 | 2R8S | 0.3247 | 1 | UAA/GAN variation | R | P4-P6 RNA RIBOZYME DOMAIN | C | 216 | C | 217 | A | 218 | A | 219 | G | 220 | * | U | 253 | G | 254 | A | 256 | G | 257 | cWW | tSH | tHS | cWW | |
| 7 | IL_8P9A_346 | 8P9A | 0.3725 | 2 | UAA/GAN related (H) | AR | LSU rRNA | C | 3084 | G | 3085 | A | 3086 | A | 3087 | G | 3088 | * | U | 3054 | U | 3055 | U | 3057 | G | 3059 | cWW | ntHW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGCAC*GGGG | 1 |
| UGUAC*GGAG | 1 |
| UGAAG*CGAG | 1 |
| AGAAG*UGGU | 1 |
| GGUAG*UGUAC | 1 |
| CCAAG*UGCAG | 1 |
| CGAAG*UUUUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCA*GG | 1 |
| GUA*GA | 1 |
| GAA*GA | 1 |
| GAA*GG | 1 |
| GUA*GUA | 1 |
| CAA*GCA | 1 |
| GAA*UUUU | 1 |
- Annotations
-
- UAA/GAN variation (2)
- (2)
- UAA/GAN (1)
- UAA/GAN (H) (1)
- UAA/GAN related (H) (1)
- Basepair signature
- cWW-L-R-L-tHS-cWW
- Heat map statistics
- Min 0.18 | Avg 0.31 | Max 0.52
Coloring options: