Motif IL_14935.1 Version IL_14935.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-8 | 4-7 | 4-8 | 5-6 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_5XTM_006 | 5XTM | 0.8354 | 2 | D | RNA (47-MER) | G | 8 | A | 9 | U | 10 | A | 13 | A | 14 | * | U | 35 | A | 36 | A | 37 | C | 38 | C | 39 | cWW | ncWWa | cWw | cWW | ||
2 | IL_6CZR_409 | 6CZR | 0.0000 | 0 | 1a | SSU rRNA | G | 657 | G | 658 | A | 659 | A | 660 | U | 661 | * | G | 697 | G | 698 | A | 699 | A | 700 | C | 701 | cWW | cWW | ncWw | ncWWa | ||
3 | IL_5J7L_361 | 5J7L | 0.1138 | 0 | AA | SSU rRNA | A | 673 | G | 674 | A | 675 | A | 676 | U | 677 | * | G | 713 | G | 714 | A | 715 | A | 716 | U | 717 | cWW | cWW | ncWw | cWW | ncWWa |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GAUGAAA*UAACC | 1 |
GGAAU*GGAAC | 1 |
AGAAU*GGAAU | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GAA*GAA | 2 |
AUGAA*AAC | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-cWW-L-R-cWW-cWW
- Heat map statistics
- Min 0.11 | Avg 0.40 | Max 0.85
Coloring options: