Motif IL_15861.4 Version IL_15861.4 of this group appears in releases 3.28 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 1-8 | 1-10 | 5-6 | 5-7 | 8-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5TBW_049 | 5TBW | 0.3665 | 0 | SSU/LSU pseudoknot | 1 | U | 1173 | G | 1174 | C | 1175 | C | 1176 | G | 1177 | G | 1178 | A | 1179 | A | 1180 | * | U | 1325 | A | 1326 | cWW | chH | cWW | ||
| 2 | IL_4WF9_037 | 4WF9 | 0.1348 | 0 | SSU/LSU pseudoknot | X | U | 1048 | C | 1049 | C | 1050 | C | 1051 | A | 1052 | A | 1053 | A | 1054 | A | 1055 | * | U | 1194 | A | 1195 | cWW | ncSH | cWW | ||
| 3 | IL_5J7L_278 | 5J7L | 0.0927 | 0 | SSU/LSU pseudoknot | DA | U | 1004 | C | 1005 | C | 1006 | C | 1007 | A | 1008 | A | 1009 | A | 1010 | G | 1011 | * | C | 1150 | A | 1151 | cWW | cSH | cWW | ||
| 4 | IL_4IOA_033 | 4IOA | 0.0888 | 0 | SSU/LSU pseudoknot | X | U | 1015 | C | 1016 | C | 1017 | C | 1018 | U | 1019 | A | 1020 | A | 1021 | A | 1022 | * | U | 1161 | A | 1162 | cWW | cSH | cWW | ||
| 5 | IL_4Y4O_214 | 4Y4O | 0.0000 | 0 | SSU/LSU pseudoknot | 2A | C | 1004 | C | 1005 | C | 1006 | C | 1007 | C | 1008 | A | 1009 | A | 1010 | G | 1011 | * | C | 1150 | G | 1151 | cWW | cSH | cWW | ||
| 6 | IL_4V9F_038 | 4V9F | 0.1742 | 0 | SSU/LSU pseudoknot | 0 | U | 1101 | C | 1102 | C | 1103 | C | 1104 | C | 1105 | A | 1106 | A | 1107 | G | 1108 | * | C | 1254 | A | 1255 | cWW | cSH | cWW | ||
| 7 | IL_5J7L_024 | 5J7L | 0.3284 | 0 | SSU/LSU pseudoknot | AA | C | 504 | G | 505 | G | 506 | C | 507 | U | 508 | A | 509 | A | 510 | C | 511 | * | G | 540 | G | 541 | cWW | ncSH | ntSW | cWW | |
| 8 | IL_4LFB_020 | 4LFB | 0.3316 | 0 | SSU/LSU pseudoknot | A | C | 504 | G | 505 | G | 506 | C | 507 | C | 508 | A | 509 | A | 510 | C | 511 | * | G | 540 | G | 541 | cWW | cSH | cWW | ||
| 9 | IL_6CZR_132 | 6CZR | 0.3464 | 0 | SSU/LSU pseudoknot | 1a | C | 488 | G | 489 | G | 490 | C | 491 | C | 492 | A | 493 | A | 494 | C | 495 | * | G | 524 | G | 525 | ncSH | cWW | ncSH | cWW | |
| 10 | IL_4V88_413 | 4V88 | 0.3193 | 0 | SSU/LSU pseudoknot | A6 | A | 550 | G | 551 | G | 552 | G | 553 | C | 554 | A | 555 | A | 556 | G | 557 | * | C | 587 | U | 588 | cWW | cSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGCCAAC*GG | 2 |
| UGCCGGAA*UA | 1 |
| UCCCAAAA*UA | 1 |
| UCCCAAAG*CA | 1 |
| UCCCUAAA*UA | 1 |
| CCCCCAAG*CG | 1 |
| UCCCCAAG*CA | 1 |
| CGGCUAAC*GG | 1 |
| AGGGCAAG*CU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CCCAAA* | 2 |
| CCCCAA* | 2 |
| GGCCAA* | 2 |
| GCCGGA* | 1 |
| CCCUAA* | 1 |
| GGCUAA* | 1 |
| GGGCAA* | 1 |
Release history
| Release | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- SSU/LSU pseudoknot (10)
- Basepair signature
- cWW-L-L-L-cSH-L-cWW
- Heat map statistics
- Min 0.07 | Avg 0.26 | Max 0.45
Coloring options: