#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7 8break 9 101-81-105-65-78-9
1 IL_5TBW_0495TBW0.36650SSU/LSU pseudoknot1 LSU rRNAU1173G1174C1175C1176G1177G1178A1179A1180*U1325A1326cWWchHcWW
2 IL_4WF9_0374WF90.13480SSU/LSU pseudoknotX LSU rRNAU1048C1049C1050C1051A1052A1053A1054A1055*U1194A1195cWWncSHcWW
3 IL_5J7L_2785J7L0.09270SSU/LSU pseudoknotDA LSU rRNAU1004C1005C1006C1007A1008A1009A1010G1011*C1150A1151cWWcSHcWW
4 IL_4IOA_0334IOA0.08880SSU/LSU pseudoknotX LSU rRNAU1015C1016C1017C1018U1019A1020A1021A1022*U1161A1162cWWcSHcWW
5 IL_4Y4O_2144Y4O0.00000SSU/LSU pseudoknot2A LSU rRNAC1004C1005C1006C1007C1008A1009A1010G1011*C1150G1151cWWcSHcWW
6 IL_4V9F_0384V9F0.17420SSU/LSU pseudoknot0 LSU rRNAU1101C1102C1103C1104C1105A1106A1107G1108*C1254A1255cWWcSHcWW
7 IL_5J7L_0245J7L0.32840SSU/LSU pseudoknotAA SSU rRNAC504G505G506C507U508A509A510C511*G540G541cWWncSHntSWcWW
8 IL_4LFB_0204LFB0.33160SSU/LSU pseudoknotA SSU rRNAC504G505G506C507C508A509A510C511*G540G541cWWcSHcWW
9 IL_6CZR_1326CZR0.34640SSU/LSU pseudoknot1a SSU rRNAC488G489G490C491C492A493A494C495*G524G525ncSHcWWncSHcWW
10 IL_4V88_4134V880.31930SSU/LSU pseudoknotA6 SSU rRNAA550G551G552G553C554A555A556G557*C587U588cWWcSHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGGCCAAC*GG2
UGCCGGAA*UA1
UCCCAAAA*UA1
UCCCAAAG*CA1
UCCCUAAA*UA1
CCCCCAAG*CG1
UCCCCAAG*CA1
CGGCUAAC*GG1
AGGGCAAG*CU1
Non-Watson-Crick part of the motif
SequenceCounts
CCCAAA*2
CCCCAA*2
GGCCAA*2
GCCGGA*1
CCCUAA*1
GGCUAA*1
GGGCAA*1

Release history

Release3.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.47
Date2020-02-052020-03-042020-04-012020-04-292020-05-272020-06-242020-07-222020-08-192020-09-162020-10-142020-11-112020-12-092021-01-062021-02-032021-03-032021-03-312021-04-282021-05-262021-06-232021-07-21
StatusUpdated, 2 parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • SSU/LSU pseudoknot (10)
  • Basepair signature
    cWW-L-L-L-cSH-L-cWW
    Heat map statistics
    Min 0.07 | Avg 0.26 | Max 0.45
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