Motif IL_16166.1 Version IL_16166.1 of this group appears in releases 0.5 to 0.8
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1NTB_001 | 1NTB | 0.0000 | 0 | A+B | RNA (22-mer) + RNA (18-mer) | C | 5 | G | 6 | C | 7 | * | G | 114 | G | 115 | cWW | cWW | |
| 2 | IL_1U6B_010 | 1U6B | 0.7116 | 0 | Basepair outside cWW, intercalation pocket | B | 197-MER | U | 160 | A | 161 | U | 162 | * | A | 150 | G | 151 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGC*GG | 1 |
| UAU*AG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G* | 1 |
| A* | 1 |
Release history
| Release | 0.5 | 0.6 | 0.7 | 0.8 |
|---|---|---|---|---|
| Date | 2011-12-08 | 2012-04-02 | 2013-02-17 | 2013-02-17 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_16166.1 | Only in the parent motif |
|---|---|---|---|
| IL_76212.1 Compare | IL_1NTB_001 | IL_1U6B_010 | IL_3F1H_069, IL_1U9S_008 |
Children motifs
| Child motif | Common motif instances | Only in IL_16166.1 | Only in the child motif |
|---|---|---|---|
| IL_16166.2 Compare | IL_1U6B_010, IL_1NTB_001 | IL_4FNJ_004 |
- Annotations
-
- Basepair outside cWW, intercalation pocket (1)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.71 | Avg 0.36 | Max 0.71
Coloring options: