Motif IL_16166.2 Version IL_16166.2 of this group appears in releases 0.9 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4FNJ_004 | 4FNJ | 0.1422 | 0 | A | RNA (35-MER) | A | 11 | G | 12 | * | U | 25 | A | 26 | U | 27 | cWW | cWW | |
| 2 | IL_1U6B_010 | 1U6B | 0.0000 | 0 | Basepair outside cWW, intercalation pocket | B | 197-MER | A | 150 | G | 151 | * | U | 160 | A | 161 | U | 162 | cWW | cWW |
| 3 | IL_1NTB_001 | 1NTB | 0.7116 | 0 | B+A | RNA (18-mer) | G | 114 | G | 115 | * | C | 5 | G | 6 | C | 7 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AG*UAU | 2 |
| GG*CGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *A | 2 |
| *G | 1 |
Release history
| Release | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 |
|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_16166.2 | Only in the parent motif |
|---|---|---|---|
| IL_16166.1 Compare | IL_1U6B_010, IL_1NTB_001 | IL_4FNJ_004 |
Children motifs
| Child motif | Common motif instances | Only in IL_16166.2 | Only in the child motif |
|---|---|---|---|
| IL_16166.3 Compare | IL_1U6B_010, IL_1NTB_001, IL_4FNJ_004 | IL_4A1B_069 |
- Annotations
-
- Basepair outside cWW, intercalation pocket (1)
- Basepair signature
- cWW-R-cWW
- Heat map statistics
- Min 0.14 | Avg 0.36 | Max 0.77
Coloring options: