#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 51-53-4
1 IL_1VW3_0241VW30.93202A21S ribosomal RNAU855A856A858*U738A740cWWcWW
2 IL_4FNJ_0044FNJ0.14220ARNA (35-MER)U25A26U27*A11G12cWWcWW
3 IL_1U6B_0101U6B0.00000Basepair outside cWW, intercalation pocketB197-MERU160A161U162*A150G151cWWcWW
4 IL_1NTB_0011NTB0.71160A+BRNA (22-mer) + RNA (18-mer)C5G6C7*G114G115cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UAU*AG2
UAUA*UAA1
CGC*GG1
Non-Watson-Crick part of the motif
SequenceCounts
A*2
AU*A1
G*1

Release history

Release1.141.151.171.18
Date2014-04-272014-06-202014-09-042014-10-07
StatusUpdated, 1 parentExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_16166.5Only in the parent motif
IL_16166.4
Compare
IL_1U6B_010, IL_4FNJ_004, IL_1NTB_001IL_1VW3_024

Children motifs

This motif has no children motifs.
Annotations
  • (3)
  • Basepair outside cWW, intercalation pocket (1)
  • Basepair signature
    cWW-L-cWW
    Heat map statistics
    Min 0.14 | Avg 0.56 | Max 1.00
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