Motif IL_16166.5 Version IL_16166.5 of this group appears in releases 1.14 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1VW3_024 | 1VW3 | 0.9320 | 2 | A | U | 855 | A | 856 | A | 858 | * | U | 738 | A | 740 | cWW | cWW | |
| 2 | IL_4FNJ_004 | 4FNJ | 0.1422 | 0 | A | U | 25 | A | 26 | U | 27 | * | A | 11 | G | 12 | cWW | cWW | |
| 3 | IL_1U6B_010 | 1U6B | 0.0000 | 0 | Major groove intercalation | B | U | 160 | A | 161 | U | 162 | * | A | 150 | G | 151 | cWW | cWW |
| 4 | IL_1NTB_001 | 1NTB | 0.7116 | 0 | A+B | C | 5 | G | 6 | C | 7 | * | G | 114 | G | 115 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAU*AG | 2 |
| UAUA*UAA | 1 |
| CGC*GG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A* | 2 |
| AU*A | 1 |
| G* | 1 |
Release history
| Release | 1.14 | 1.15 | 1.17 | 1.18 |
|---|---|---|---|---|
| Date | 2014-04-27 | 2014-06-20 | 2014-09-04 | 2014-10-07 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_16166.5 | Only in the parent motif |
|---|---|---|---|
| IL_16166.4 Compare | IL_1U6B_010, IL_4FNJ_004, IL_1NTB_001 | IL_1VW3_024 |
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Major groove intercalation (1)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.14 | Avg 0.56 | Max 1.00
Coloring options: