#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 4 51-52-3
1 IL_4FNJ_0044FNJ0.14220ARNA (35-MER)A11G12*U25A26U27cWWcWW
2 IL_1U6B_0101U6B0.00000Basepair outside cWW, intercalation pocketB197-MERA150G151*U160A161U162cWWcWW
3 IL_1NTB_0011NTB0.71160B+ARNA (18-mer)G114G115*C5G6C7cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
AG*UAU2
GG*CGC1
Non-Watson-Crick part of the motif
SequenceCounts
*A2
*G1

Release history

Release1.51.61.71.81.91.101.111.121.13
Date2013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-29
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_16166.4Only in the parent motif
IL_16166.3
Compare
IL_1U6B_010, IL_4FNJ_004, IL_1NTB_001IL_4A1B_069

Children motifs

Child motifCommon motif instancesOnly in IL_16166.4Only in the child motif
IL_16166.5
Compare
IL_1U6B_010, IL_4FNJ_004, IL_1NTB_001IL_1VW3_024
Annotations
  • (2)
  • Basepair outside cWW, intercalation pocket (1)
  • Basepair signature
    cWW-R-cWW
    Heat map statistics
    Min 0.14 | Avg 0.36 | Max 0.77
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