Motif IL_16166.4 Version IL_16166.4 of this group appears in releases 1.5 to 1.13
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4FNJ_004 | 4FNJ | 0.1422 | 0 | A | RNA (35-MER) | A | 11 | G | 12 | * | U | 25 | A | 26 | U | 27 | cWW | cWW | |
2 | IL_1U6B_010 | 1U6B | 0.0000 | 0 | Basepair outside cWW, intercalation pocket | B | 197-MER | A | 150 | G | 151 | * | U | 160 | A | 161 | U | 162 | cWW | cWW |
3 | IL_1NTB_001 | 1NTB | 0.7116 | 0 | B+A | RNA (18-mer) | G | 114 | G | 115 | * | C | 5 | G | 6 | C | 7 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
AG*UAU | 2 |
GG*CGC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
*A | 2 |
*G | 1 |
Release history
Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
---|---|---|---|---|---|---|---|---|---|
Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
Parent motif | Common motif instances | Only in IL_16166.4 | Only in the parent motif |
---|---|---|---|
IL_16166.3 Compare | IL_1U6B_010, IL_4FNJ_004, IL_1NTB_001 | IL_4A1B_069 |
Children motifs
Child motif | Common motif instances | Only in IL_16166.4 | Only in the child motif |
---|---|---|---|
IL_16166.5 Compare | IL_1U6B_010, IL_4FNJ_004, IL_1NTB_001 | IL_1VW3_024 |
- Annotations
-
- (2)
- Basepair outside cWW, intercalation pocket (1)
- Basepair signature
- cWW-R-cWW
- Heat map statistics
- Min 0.14 | Avg 0.36 | Max 0.77
Coloring options: