Motif IL_16498.1 Version IL_16498.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-2 | 1-5 | 2-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3PYO_031 | 3PYO | 0.2049 | 0 | A | 23S ribosomal RNA | U | 877 | A | 878 | G | 879 | * | C | 898 | A | 899 | cWW | tHS | cWW | ||
| 2 | IL_2AW7_004 | 2AW7 | 0.0000 | 0 | A | 16S ribosomal RNA | C | 54 | A | 55 | U | 56 | * | A | 356 | G | 357 | cWW | tHS | cWW | ||
| 3 | IL_2XZM_005 | 2XZM | 0.0866 | 0 | A | 18S RRNA | C | 49 | A | 50 | U | 51 | * | A | 420 | G | 421 | cWW | tHS | cWW | ||
| 4 | IL_2XZM_070 | 2XZM | 0.1864 | 0 | A | 18S RRNA | C | 1278 | U | 1279 | G | 1280 | * | C | 1289 | G | 1290 | ncSH | cWW | tHS | cWW | |
| 5 | IL_1FJG_052 | 1FJG | 0.4148 | 0 | A | SSU rRNA | C | 1260 | A | 1261 | C | 1262 | * | G | 1273 | G | 1274 | tHS | cWW | |||
| 6 | IL_1FJG_004 | 1FJG | 0.5105 | 0 | Minor groove platform (H) | A | SSU rRNA | C | 54 | A | 55 | U | 56 | * | A | 356 | G | 357 | cWW | tHS | cWW | |
| 7 | IL_2QBG_072 | 2QBG | 0.5416 | 1 | B | 23S rRNA | C | 1837 | G | 1839 | G | 1840 | * | C | 1902 | G | 1903 | cWW | tHS | cWW | ||
| 8 | IL_2ZJR_067 | 2ZJR | 0.5371 | 1 | Major groove outside cWW, minor groove, intercalation pocket (H) | X | LSU rRNA | C | 1829 | G | 1831 | G | 1832 | * | C | 1885 | G | 1886 | cWW | ntHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAU*AG | 3 |
| CCGG*CG | 2 |
| UAG*CA | 1 |
| CUG*CG | 1 |
| CAC*GG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A* | 5 |
| CG* | 2 |
| U* | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_16498.1 | Only in the parent motif |
|---|---|---|---|
| IL_83385.2 Compare | IL_1FJG_004, IL_1FJG_052 | IL_2XZM_005, IL_2QBG_072, IL_2ZJR_067, IL_2AW7_004, IL_2XZM_070, IL_3PYO_031 | IL_3F1H_031, IL_1FJG_038, IL_1S72_033, IL_2QWY_009, IL_1S72_035, IL_3F1H_027, IL_3F1H_070, IL_3G78_005, IL_1S72_075, IL_2QWY_006, IL_1FJG_042, IL_2GDI_007, IL_2QWY_003, IL_3F1H_078, IL_2ZJR_077, IL_2GDI_003 |
| IL_87014.1 Compare | IL_2ZJR_067 | IL_2XZM_005, IL_2QBG_072, IL_1FJG_004, IL_1FJG_052, IL_2AW7_004, IL_2XZM_070, IL_3PYO_031 | IL_1FJG_039, IL_3F1H_068, IL_2ZJR_027, IL_2ZJR_003, IL_3F1H_056, IL_1FJG_051, IL_1S72_066 |
Children motifs
| Child motif | Common motif instances | Only in IL_16498.1 | Only in the child motif |
|---|---|---|---|
| IL_44540.1 Compare | IL_2XZM_005, IL_1FJG_004, IL_2XZM_070, IL_1FJG_052, IL_2AW7_004 | IL_2QBG_072, IL_3PYO_031, IL_2ZJR_067 | IL_3UXR_028, IL_3UXR_003, IL_2QBG_081, IL_2AW7_050, IL_2QBG_008, IL_2QWY_006, IL_1FJG_042, IL_2GDI_007, IL_2QWY_003, IL_2AW7_035, IL_2GDI_003, IL_3U5F_029, IL_1S72_075, IL_3U5F_062, IL_1Y0Q_003, IL_3IWN_001, IL_1U6B_007, IL_2ZJR_027, IL_1X8W_004, IL_2ZJR_003, IL_2AW7_045, IL_3U5H_041, IL_2QWY_009, IL_2AW7_067, IL_4A1B_049, IL_4A1B_128, IL_4A1B_020, IL_3RW6_005, IL_1FJG_051, IL_3UXR_078, IL_3RW6_001, IL_2XZM_061, IL_1S72_033, IL_1FJG_038, IL_3U5F_071, IL_1S72_035, IL_3U5F_005, IL_3UXR_070, IL_4A1B_096, IL_3U5H_099, IL_2ZJR_077 |
| IL_94430.1 Compare | IL_2QBG_072, IL_2ZJR_067 | IL_2XZM_005, IL_1FJG_004, IL_2AW7_004, IL_1FJG_052, IL_2XZM_070, IL_3PYO_031 | IL_3UXR_032, IL_2AW7_046, IL_3UXR_055, IL_2ZJR_105, IL_3Q1Q_003, IL_2AW7_007, IL_3UXR_068, IL_4A1B_086, IL_2XXA_013, IL_1S72_066, IL_2XXA_006, IL_3U5H_145 |
- Annotations
-
- (6)
- Minor groove platform (H) (1)
- Major groove outside cWW, minor groove, intercalation pocket (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.09 | Avg 0.36 | Max 0.58
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