Motif IL_87014.1 Version IL_87014.1 of this group appears in releases 0.4 to 0.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | 2-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1S72_066 | 1S72 | 0.5339 | 2 | Minor groove platform, major groove intercalation (H) | 0 | LSU rRNA | C | 1893 | A | 1895 | * | C | 1943 | G | 1944 | cWW | ||
| 2 | IL_1FJG_039 | 1FJG | 0.0000 | 3 | Minor groove platform (H) | A | SSU rRNA | G | 993 | A | 996 | * | A | 1044 | C | 1045 | cWW | cWS | |
| 3 | IL_3F1H_056 | 3F1H | 0.6592 | 1 | A | 23S RRNA | G | 1448 | G | 1449 | * | C | 1462 | C | 1463 | cWW | cWW | ||
| 4 | IL_3F1H_068 | 3F1H | 0.8404 | 2 | A | 23S RRNA | C | 1838 | G | 1840 | * | C | 1902 | G | 1903 | cWW | |||
| 5 | IL_2ZJR_003 | 2ZJR | 0.7380 | 1 | Minor groove platform (H) | X | LSU rRNA | U | 447 | C | 449 | * | G | 42 | A | 43 | cWW | cWW | |
| 6 | IL_2ZJR_067 | 2ZJR | 0.7517 | 2 | Minor groove platform, major groove intercalation (H) | X | LSU rRNA | C | 1830 | G | 1832 | * | C | 1885 | G | 1886 | cWW | ||
| 7 | IL_2ZJR_027 | 2ZJR | 0.7757 | 1 | Minor groove platform (H) | X | LSU rRNA | U | 925 | C | 927 | * | G | 875 | A | 876 | cWW | cWW | |
| 8 | IL_1FJG_051 | 1FJG | 0.8453 | 1 | Not an internal loop (H) | A | SSU rRNA | G | 1274 | G | 1276 | * | C | 1259 | C | 1260 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAG*CC | 2 |
| CCGG*CG | 2 |
| UCC*GA | 2 |
| CCAG*CG | 1 |
| GACAU*AC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A* | 2 |
| CG* | 2 |
| C* | 2 |
| CA* | 1 |
| ACA* | 1 |
Release history
| Release | 0.4 |
|---|---|
| Date | 2011-12-08 |
| Status | > 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_87014.1 | Only in the parent motif |
|---|---|---|---|
| IL_86058.1 Compare | IL_3F1H_068, IL_2ZJR_027, IL_2ZJR_003, IL_3F1H_056, IL_2ZJR_067, IL_1S72_066 | IL_1FJG_039, IL_1FJG_051 | IL_3F1H_031, IL_1S72_033, IL_1FJG_004, IL_3F1H_070, IL_1FJG_052, IL_1FJG_042 |
| IL_90628.1 Compare | IL_1FJG_039 | IL_3F1H_068, IL_2ZJR_027, IL_2ZJR_003, IL_3F1H_056, IL_2ZJR_067, IL_1FJG_051, IL_1S72_066 | IL_1FJG_037 |
| IL_83385.1 Compare | IL_1FJG_051 | IL_1FJG_039, IL_3F1H_068, IL_2ZJR_027, IL_2ZJR_003, IL_3F1H_056, IL_2ZJR_067, IL_1S72_066 | IL_3F1H_027, IL_1S72_075, IL_3G78_005, IL_1FJG_038, IL_1S72_035, IL_2QWY_009, IL_2QWY_006, IL_2GDI_007, IL_2QWY_003, IL_3F1H_078, IL_2ZJR_077, IL_2GDI_003 |
Children motifs
- Annotations
-
- Minor groove platform (H) (3)
- Minor groove platform, major groove intercalation (H) (2)
- (2)
- Not an internal loop (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.26 | Avg 0.61 | Max 1.01
Coloring options: