Motif IL_94430.1 Version IL_94430.1 of this group appears in releases 0.6 to 0.6

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)		1		2		3	break		4		5	1-5	2-4	2-5	3-4
1	IL_2AW7_046	2AW7	0.7086	2		A	G	993	A	996	U	997	*	A	1044	C	1045	cWW		cWS	cWW
2	IL_3Q1Q_003	3Q1Q	0.2022	2		B	G	103	A	106	G	107	*	C	209	C	210	cWW		cWS	cWW
3	IL_3UXR_032	3UXR	0.1584	0		A	U	877	A	878	G	879	*	C	898	A	899	cWW			cWW
4	IL_4A1B_086	4A1B	0.1776	1		1	C	2191	A	2193	G	2194	*	C	2240	G	2241	cWW			cWW
5	IL_2QBG_072	2QBG	0.0000	1		B	C	1837	G	1839	G	1840	*	C	1902	G	1903	cWW		tHS	cWW
6	IL_2XXA_013	2XXA	0.1461	0		G	G	68	A	69	U	70	*	G	28	C	29	cWW			cWW
7	IL_1S72_066	1S72	0.3567	1	Minor groove platform, major groove intercalation (H)	0	C	1893	A	1895	G	1896	*	C	1943	G	1944	cWW			cWW
8	IL_3UXR_068	3UXR	0.3630	1		A	C	1837	G	1839	G	1840	*	C	1902	G	1903	cWW		ntHS	cWW
9	IL_2ZJR_067	2ZJR	0.4356	1	Minor groove platform, major groove intercalation (H)	X	C	1829	G	1831	G	1832	*	C	1885	G	1886	cWW		ntHS	cWW
10	IL_2XXA_006	2XXA	0.5420	0		F	G	68	A	69	U	70	*	G	28	C	29	cWW	ncWW		cWW
11	IL_3UXR_055	3UXR	0.5670	0		A	G	1448	A	1449	G	1450	*	C	1462	C	1463	cWW			cWW
12	IL_2ZJR_105	2ZJR	0.7093	1	Minor groove platform (H)	Y	G	53	C	55	G	56	*	C	32	C	33	cWW			cWW
13	IL_3U5H_145	3U5H	0.9044	1		7	G	49	A	51	G	52	*	C	28	C	29	cWW		cWS	cWW
14	IL_2AW7_007	2AW7	0.9402	1		A	U	70	A	72	C	73	*	G	97	A	98	cWW		cWS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CCGG*CG	3
CCAG*CG	2
GAU*GC	2
GACAU*AC	1
GACAG*CC	1
UAG*CA	1
GAG*CC	1
GUCG*CC	1
GUAG*CC	1
UAAC*GA	1

Non-Watson-Crick part of the motif

Sequence	Counts
A*	4
CG*	3
ACA*	2
CA*	2
UC*	1
UA*	1
AA*	1

Release history

Release	0.6
Date	2012-04-02
Status	> 2 parents

Parent motifs

Parent motif	Common motif instances	Only in IL_94430.1	Only in the parent motif
IL_71985.1 Compare	IL_3Q1Q_003, IL_1S72_066	IL_2QBG_072, IL_3UXR_032, IL_2AW7_046, IL_3UXR_055, IL_2ZJR_105, IL_2AW7_007, IL_3UXR_068, IL_2ZJR_067, IL_4A1B_086, IL_2XXA_013, IL_2XXA_006, IL_3U5H_145
IL_78918.1 Compare	IL_2XXA_013, IL_2XXA_006	IL_2QBG_072, IL_3UXR_032, IL_2AW7_046, IL_3UXR_055, IL_2ZJR_105, IL_3Q1Q_003, IL_3UXR_068, IL_2ZJR_067, IL_4A1B_086, IL_1S72_066, IL_2AW7_007, IL_3U5H_145	IL_3O58_049, IL_2QBG_084, IL_3O58_081, IL_2ZJR_055, IL_1DUH_005, IL_3O58_149, IL_3O58_107, IL_2QWY_008, IL_3O58_023, IL_3O58_004, IL_1O9M_002, IL_2QWY_002, IL_1FJG_046, IL_1O9M_001, IL_2QBG_027, IL_1DUH_001, IL_2QBG_029, IL_1S72_005, IL_2O3X_001, IL_2ZJR_084, IL_3O58_025, IL_1ZX7_007, IL_3O58_147, IL_2ZJR_044, IL_2QBG_090, IL_2ZJR_021, IL_1MWL_003, IL_1MWL_002, IL_3O58_058, IL_3PYO_079, IL_3O30_016, IL_1ZX7_005, IL_2O3X_002, IL_2ZJR_005, IL_2AW7_047, IL_1ZX7_003, IL_3O58_010, IL_3MOJ_004, IL_1S72_079, IL_3O58_153, IL_2QBG_010, IL_1ZX7_001, IL_3O58_156, IL_3O58_036, IL_2O3X_003, IL_2AW7_024, IL_1T0E_001, IL_3PYO_005, IL_3PYO_023
IL_16498.1 Compare	IL_2QBG_072, IL_2ZJR_067	IL_3UXR_032, IL_2AW7_046, IL_3UXR_055, IL_2ZJR_105, IL_3Q1Q_003, IL_2AW7_007, IL_3UXR_068, IL_4A1B_086, IL_2XXA_013, IL_1S72_066, IL_2XXA_006, IL_3U5H_145	IL_2XZM_005, IL_1FJG_004, IL_2AW7_004, IL_1FJG_052, IL_2XZM_070, IL_3PYO_031
IL_70242.1 Compare	IL_2AW7_007, IL_2AW7_046	IL_2QBG_072, IL_3UXR_032, IL_3UXR_055, IL_2ZJR_105, IL_3Q1Q_003, IL_3UXR_068, IL_2ZJR_067, IL_4A1B_086, IL_2XXA_013, IL_1S72_066, IL_2XXA_006, IL_3U5H_145	IL_1FJG_039, IL_2AW7_054, IL_3MUR_005, IL_2AW7_044, IL_2AW7_013, IL_3O30_059, IL_2QBG_003
IL_33235.1 Compare	IL_2ZJR_105	IL_2QBG_072, IL_3UXR_032, IL_2AW7_046, IL_3UXR_055, IL_3Q1Q_003, IL_2AW7_007, IL_3UXR_068, IL_2ZJR_067, IL_4A1B_086, IL_2XXA_013, IL_1S72_066, IL_2XXA_006, IL_3U5H_145	IL_3PYO_065, IL_3PYO_100, IL_2AW7_025, IL_3O58_088, IL_2XZM_040, IL_2XZM_053, IL_3O58_102, IL_1FJG_051, IL_2AW7_035, IL_3PYO_054, IL_3O30_055

Children motifs

Child motif	Common motif instances	Only in IL_94430.1	Only in the child motif
IL_94430.2 Compare	IL_2QBG_072, IL_2AW7_046, IL_2ZJR_105, IL_3Q1Q_003, IL_2ZJR_067, IL_4A1B_086, IL_2XXA_013, IL_1S72_066, IL_2AW7_007, IL_3U5H_145	IL_3UXR_055, IL_3UXR_068, IL_3UXR_032, IL_2XXA_006	IL_1FJG_039, IL_3V2F_068, IL_3V2F_032, IL_3V2F_055

Annotations: (11)
Minor groove platform, major groove intercalation (H) (2)
Minor groove platform (H) (1)
Basepair signature: 05_cWW-cWS-cWW
Heat map statistics: Min 0.12 | Avg 0.54 | Max 0.97

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Coloring options: Nucleotide numbers

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