Motif IL_17470.4 Version IL_17470.4 of this group appears in releases 3.48 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-9 | 3-8 | 4-7 | 5-6 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_024 | 4V9F | 0.2321 | 2 | tHW-tHW cross-strand stack | 0 | LSU rRNA | G | 765 | A | 766 | A | 767 | U | 768 | C | 769 | * | G | 892 | C | 893 | A | 895 | C | 896 | A | 897 | C | 899 | cWW | tHW | tHW | cWW | |
| 2 | IL_5J7L_260 | 5J7L | 0.0730 | 2 | tHW-tHW cross-strand stack | DA | LSU rRNA | G | 674 | A | 675 | A | 676 | A | 677 | C | 678 | * | G | 799 | A | 800 | A | 802 | U | 803 | A | 804 | C | 806 | cWW | tHW | tHW | tWW | cWW |
| 3 | IL_4Y4O_195 | 4Y4O | 0.0000 | 2 | tHW-tHW cross-strand stack | 2A | LSU rRNA | G | 674 | A | 675 | A | 676 | A | 677 | C | 678 | * | G | 799 | A | 800 | A | 802 | U | 803 | A | 804 | C | 806 | cWW | tHW | tHW | tWW | cWW |
| 4 | IL_7A0S_015 | 7A0S | 0.2817 | 2 | tHW-tHW cross-strand stack | X | LSU rRNA | G | 687 | A | 688 | A | 689 | A | 690 | C | 691 | * | G | 812 | A | 813 | A | 815 | U | 816 | A | 817 | C | 819 | cWW | tHW | ntWW | cWW | |
| 5 | IL_4WF9_021 | 4WF9 | 0.2909 | 2 | tHW-tHW cross-strand stack | X | LSU rRNA | G | 719 | A | 720 | A | 721 | A | 722 | C | 723 | * | G | 844 | A | 845 | A | 847 | U | 848 | A | 849 | C | 851 | cWW | tHW | ntWW | ntWW | cWW |
| 6 | IL_5TBW_028 | 5TBW | 0.3614 | 2 | tHW-tHW cross-strand stack | 1 | LSU rRNA | G | 805 | A | 806 | A | 807 | A | 808 | G | 809 | * | C | 931 | U | 932 | G | 934 | U | 935 | A | 936 | C | 938 | cWW | tHW | ntHH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAAC*GAGAUAGC | 4 |
| GAAUC*GCAACAGC | 1 |
| GAAAG*CUAGUAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAA*AGAUAG | 4 |
| AAU*CAACAG | 1 |
| AAA*UAGUAG | 1 |
- Annotations
-
- tHW-tHW cross-strand stack (6)
- Basepair signature
- cWW-R-tHW-tHW-tWW-cWW
- Heat map statistics
- Min 0.07 | Avg 0.22 | Max 0.36
Coloring options: