Motif IL_18471.2 Version IL_18471.2 of this group appears in releases 3.80 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-3 | 2-6 | 3-6 | 3-7 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3OXE_002 | 3OXE | 0.6938 | 1 | A | domain II of glycine riboswitch | C | 31 | G | 32 | A | 34 | G | 35 | * | C | 70 | A | 71 | G | 72 | cWW | tHS | cWW | ||||
| 2 | IL_4V9F_003 | 4V9F | 0.0000 | 0 | Major groove platform with extra cWW | 0 | LSU rRNA | C | 440 | A | 441 | A | 442 | C | 443 | * | G | 39 | C | 40 | G | 41 | cWW | cSH | cWWa | ncWW | cWW | |
| 3 | IL_3PDR_004 | 3PDR | 0.2900 | 0 | Major groove platform with extra cWW | X | M-box riboswitch (ykoK leader) | C | 33 | U | 34 | C | 35 | C | 36 | * | G | 149 | U | 150 | G | 151 | cWW | cSH | cwW | cWW | ||
| 4 | IL_8C3A_429 | 8C3A | 0.4364 | 0 | CM | SSU rRNA | C | 656 | C | 657 | A | 658 | U | 659 | * | A | 667 | U | 668 | G | 669 | cWW | ncSH | ncWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAAG*CAG | 1 |
| CAAC*GCG | 1 |
| CUCC*GUG | 1 |
| CCAU*AUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAA*A | 1 |
| AA*C | 1 |
| UC*U | 1 |
| CA*U | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Major groove platform with extra cWW (2)
- Basepair signature
- cWW-cSH-cWW-cWW
- Heat map statistics
- Min 0.29 | Avg 0.44 | Max 0.84
Coloring options: