Motif IL_19222.1 Version IL_19222.1 of this group appears in releases 3.62 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5J7L_026 | 5J7L | 0.2149 | 5 | AA | SSU rRNA | C | 880 | G | 881 | * | C | 569 | G | 575 | cWW | cWW | |
| 2 | IL_4LFB_022 | 4LFB | 0.1878 | 5 | A | SSU rRNA | C | 880 | G | 881 | * | C | 569 | G | 575 | cWW | cWW | |
| 3 | IL_6CZR_134 | 6CZR | 0.0000 | 5 | 1a | SSU rRNA | C | 858 | G | 859 | * | C | 553 | G | 559 | cWW | cWW | |
| 4 | IL_6JOO_001 | 6JOO | 0.4393 | 3 | B | Guide RNA | G | 57 | C | 58 | * | G | 61 | C | 65 | cWW | cWW | |
| 5 | IL_6JQ5_002 | 6JQ5 | 0.9142 | 2 | Multiple bulged bases | A | RNA (82-MER) | U | 58 | A | 60 | * | U | 34 | A | 36 | cWW | cWW |
| 6 | IL_6JQ5_005 | 6JQ5 | 0.9371 | 2 | Multiple bulged bases | B | RNA (82-MER) | U | 34 | A | 36 | * | U | 58 | A | 60 | cWW | cWW |
| 7 | IL_6JQ6_005 | 6JQ6 | 0.9328 | 2 | Multiple bulged bases | U | RNA (81-MER) | U | 34 | A | 36 | * | U | 58 | A | 60 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CG*CGUAAAG | 3 |
| UUA*UUA | 3 |
| GC*GUUUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *GUAAA | 3 |
| U*U | 3 |
| *UUU | 1 |
Release history
| Release | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Multiple bulged bases (3)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.55 | Max 1.01
Coloring options: