Motif IL_19589.1 Version IL_19589.1 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 3-11 | 3-12 | 4-11 | 5-10 | 6-9 | 7-8 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1LNG_003 | 1LNG | 0.0000 | 0 | B | SRP S RNA | G | 200 | C | 201 | C | 202 | A | 203 | G | 204 | G | 205 | C | 206 | * | G | 215 | A | 216 | G | 217 | C | 218 | A | 219 | A | 220 | C | 221 | cWW | tSH | tHW | tHS | cWW | cWW | ||
| 2 | IL_3KTW_004 | 3KTW | 0.1502 | 0 | tSH-tHW-tHS with extra cWW pairs | C | SRP RNA | G | 201 | C | 202 | C | 203 | A | 204 | G | 205 | G | 206 | C | 207 | * | G | 216 | A | 217 | G | 218 | C | 219 | A | 220 | A | 221 | C | 222 | cWW | ntWH | tSH | tHW | ntHS | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCCAGGC*GAGCAAC | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CCAGG*AGCAA | 2 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_19589.1 | Only in the parent motif |
|---|---|---|---|
| IL_13023.1 Compare | IL_3KTW_004, IL_1LNG_003 | IL_1VWW_122, IL_1VX2_001 |
Children motifs
This motif has no children motifs.- Annotations
-
- (1)
- tSH-tHW-tHS with extra cWW pairs (1)
- Basepair signature
- cWW-cSW-tSH-tWH-tHW-tHS-cWW-cWW
- Heat map statistics
- Min 0.15 | Avg 0.08 | Max 0.15
Coloring options: