Motif IL_19935.1 Version IL_19935.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 1-3 | 1-7 | 2-6 | 3-7 | 4-7 | 5-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1FJG_047 | 1FJG | 0.0000 | 0 | Minor groove platform (H) | A | SSU rRNA | C | 1128 | C | 1129 | A | 1130 | G | 1131 | C | 1132 | * | G | 1142 | G | 1143 | ncSH | cWW | ncWS | cWW | ||
| 2 | IL_3PYO_091 | 3PYO | 0.9782 | 1 | A | 23S ribosomal RNA | C | 2680 | C | 2681 | U | 2682 | C | 2683 | U | 2684 | * | A | 2725 | G | 2727 | cWW | ntHH | tHS | ncWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCAGC*GG | 1 |
| CCUCU*AUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAG* | 1 |
| CUC*U | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_19935.1 | Only in the parent motif |
|---|---|---|---|
| IL_36906.1 Compare | IL_1FJG_047 | IL_3PYO_091 | IL_1S72_091, IL_1FJG_015, IL_3F1H_101, IL_2ZJR_096 |
Children motifs
| Child motif | Common motif instances | Only in IL_19935.1 | Only in the child motif |
|---|---|---|---|
| IL_54307.1 Compare | IL_1FJG_047 | IL_3PYO_091 | IL_4A1C_005, IL_3UXR_048, IL_3UXR_029, IL_3UXR_100, IL_2AW7_018, IL_2XZM_059, IL_3U5H_042, IL_2QBG_102, IL_3U5F_060, IL_2ZJR_047, IL_2ZJR_028, IL_1S72_091, IL_1FJG_015, IL_1KOG_008, IL_1KOG_006, IL_1KOG_007, IL_1KOG_004, IL_1KOG_005, IL_1KOG_002, IL_1KOG_003, IL_4A1B_046, IL_1KOG_001, IL_2QBG_033, IL_1S72_051, IL_2QBG_050, IL_2ZJR_096 |
- Annotations
-
- Minor groove platform (H) (1)
- (1)
- Basepair signature
- Heat map statistics
- Min 0.98 | Avg 0.49 | Max 0.98
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