#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6break 7 8 9 10 11 121-122-113-104-95-86-7
1 IL_5J7L_0575J7L0.14550AA SSU rRNAC1303G1304G1305A1306U1307U1308*A1329U1330G1331A1332A1333G1334cWWtSHtHScWwcWW
2 IL_4LFB_0554LFB0.00000A SSU rRNAC1303G1304G1305A1306U1307U1308*A1329U1330G1331A1332A1333G1334cWWtSHntSHntHScWwcWW
3 IL_4V88_4624V880.11840A6 SSU rRNAG1540G1541G1542A1543U1544A1545*U1566U1567C1568A1569A1570C1571cWWtSHtSHcWwcWW
4 IL_5TBW_0265TBW0.247301 LSU rRNAC768G769G770A771U772G773*C758U759G760A761U762G763cWWntSHntSHtHScWwcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGGAUU*AUGAAG2
GGGAUA*UUCAAC1
CGGAUG*CUGAUG1
Non-Watson-Crick part of the motif
SequenceCounts
GGAU*UGAA2
GGAU*UCAA1
GGAU*UGAU1

Release history

Release3.123.133.143.153.163.173.183.193.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.763.773.783.79
Date2018-11-162018-12-142019-01-112019-02-082019-03-082019-04-052019-05-032019-05-312019-06-282019-07-262019-08-232019-09-192019-10-162019-11-132019-12-112020-01-082020-02-052020-03-042020-04-012020-04-292020-05-272020-06-242020-07-222020-08-192020-09-162020-10-142020-11-112020-12-092021-01-062021-02-032021-03-032021-03-312021-04-282021-05-262021-06-232021-07-212021-08-182021-09-152021-10-132021-11-102021-12-082022-01-052022-02-022022-03-022022-03-302022-04-272022-05-252022-06-222022-07-202022-08-172022-10-122022-11-092022-12-072023-01-042023-02-012023-03-012023-03-292023-04-262023-05-242023-06-212023-07-192023-08-162023-09-132023-10-112023-11-082023-12-062024-01-032024-01-03
StatusNew id, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (4)
  • Basepair signature
    cWW-tSH-tSH-tHS-cWW-cWW
    Heat map statistics
    Min 0.12 | Avg 0.15 | Max 0.26
    Help

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