Motif IL_20065.1 Version IL_20065.1 of this group appears in releases 3.19 to 3.19
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-5 | 2-6 | 3-4 | 3-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5TBW_132 | 5TBW | 0.0000 | 1 | Isolated non-canonical cWW pair | 1 | LSU rRNA | G | 3328 | U | 3329 | A | 3330 | * | U | 3373 | U | 3374 | A | 3375 | A | 3376 | C | 3378 | cWW | cWw | cWW | ||
| 2 | IL_5WTI_003 | 5WTI | 0.9610 | 9 | B | RNA (123-MER) | U | 67 | A | 68 | G | 71 | * | C | 36 | U | 37 | A | 38 | A | 40 | A | 49 | cWW | tWH | cWW | tsS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUA*UUAAGC | 1 |
| UAG*CUAUAAGUGCUGCA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*UAAG | 1 |
| A*UAUAAGUGCUGC | 1 |
Release history
| Release | 3.19 |
|---|---|
| Date | 2019-05-31 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Isolated non-canonical cWW pair (1)
- (1)
- Basepair signature
- cWW-tWH-cWW-tSS-cWW
- Heat map statistics
- Min 0.96 | Avg 0.48 | Max 0.96
Coloring options: