Motif IL_20089.1 Version IL_20089.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8S95_001 | 8S95 | 0.8368 | 1 | C | Enterovirus 5' cloverleaf cis-acting replication element | C | 78 | A | 80 | G | 81 | * | C | 108 | G | 109 | cWW | ntSs | cWW | |
| 2 | IL_8SP9_001 | 8SP9 | 0.7435 | 1 | Multiple bulged bases | C | Enterovirus 5' cloverleaf cis-acting replication element | C | 76 | A | 78 | G | 79 | * | C | 106 | G | 107 | cWW | cWW | |
| 3 | IL_7KGA_006 | 7KGA | 0.2708 | 0 | Single stack bend | B | Flavivirus DB element | A | 37 | C | 38 | U | 39 | * | A | 15 | U | 16 | cWW | cWW | |
| 4 | IL_8VTW_057 | 8VTW | 0.0000 | 0 | Single stack bend (H) | 1A | LSU rRNA | G | 1448 | A | 1449 | G | 1450 | * | C | 1462 | C | 1463 | cWW | cWW | |
| 5 | IL_5VSU_003 | 5VSU | 0.2886 | 0 | Single stack bend | I | U6 snRNA | A | 75 | A | 76 | G | 77 | * | C | 69 | U | 70 | cWW | cWW | |
| 6 | IL_4V88_506 | 4V88 | 0.4368 | 0 | Minor groove platform (H) | A6 | SSU rRNA | U | 533 | A | 534 | A | 535 | * | U | 517 | A | 518 | cWW | tHS | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAG*CG | 2 |
| ACU*AU | 1 |
| GAG*CC | 1 |
| AAG*CU | 1 |
| UAA*UA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A* | 3 |
| UA* | 2 |
| C* | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Single stack bend (2)
- Minor groove platform (H) (1)
- (1)
- Multiple bulged bases (1)
- Single stack bend (H) (1)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.19 | Avg 0.49 | Max 0.90
Coloring options: