Motif IL_20679.1 Version IL_20679.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-9 | 3-8 | 4-7 | 5-6 | 5-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3PYO_017 | 3PYO | 0.0000 | 2 | A | 23S ribosomal RNA | G | 674 | A | 675 | A | 676 | A | 677 | C | 678 | * | G | 799 | A | 800 | A | 802 | U | 803 | A | 804 | C | 806 | cWW | tHW | ntWW | ntWW | cWW | ||
| 2 | IL_2ZJR_014 | 2ZJR | 0.1187 | 2 | tHW-tHW cross-strand stack (H) | X | LSU rRNA | G | 687 | A | 688 | A | 689 | A | 690 | C | 691 | * | G | 812 | A | 813 | A | 815 | U | 816 | A | 817 | C | 819 | cWW | tHW | ntWW | ntWW | cWW | ntWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAAC*GAGAUAGC | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAA*AGAUAG | 2 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_20679.1 | Only in the parent motif |
|---|---|---|---|
| IL_85104.1 Compare | IL_2ZJR_014 | IL_3PYO_017 | IL_1S72_025, IL_3F1H_017 |
Children motifs
| Child motif | Common motif instances | Only in IL_20679.1 | Only in the child motif |
|---|---|---|---|
| IL_53635.1 Compare | IL_2ZJR_014 | IL_3PYO_017 | IL_1S72_025, IL_3UXR_018, IL_4A1B_035, IL_2QBG_021, IL_3U5H_029 |
- Annotations
-
- tHW-tHW cross-strand stack (H) (1)
- (1)
- Basepair signature
- Heat map statistics
- Min 0.12 | Avg 0.06 | Max 0.12
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