#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3break 4 5 6 7 8 91-93-45-9
1 IL_3U5F_0753U5F0.00000618S rRNAC1389U1390A1391*U1407G1408G1409A1410A1411G1412cWWcWWtWH
2 IL_4BPP_0744BPP0.14860A18S RRNAC1359U1360A1361*U1378G1379G1380A1381A1382G1383cWWcWWtWH

3D structures

Complete motif including flanking bases
SequenceCounts
CUA*UGGAAG2
Non-Watson-Crick part of the motif
SequenceCounts
U*GGAA2

Release history

Release1.51.61.71.81.91.101.111.121.131.141.15
Date2013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-292014-04-272014-06-20
StatusNew id, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_21639.1Only in the parent motif
IL_28942.1
Compare
IL_3U5F_075IL_4BPP_074IL_2XZM_076

Children motifs

Child motifCommon motif instancesOnly in IL_21639.1Only in the child motif
IL_21639.2
Compare
IL_3U5F_075, IL_4BPP_074IL_3J7A_065
Annotations
  • (2)
  • Basepair signature
    cWW-L-tWH-R-R-R-cWW
    Heat map statistics
    Min 0.15 | Avg 0.07 | Max 0.15
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 1.531 s