Motif IL_23262.4 Version IL_23262.4 of this group appears in releases 1.1 to 1.13
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-4 | 2-9 | 5-6 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_2QBG_002 | 2QBG | 0.0000 | 1 | A | 5S rRNA | G | 23 | G | 24 | C | 26 | C | 27 | C | 28 | * | G | 56 | A | 57 | A | 58 | A | 59 | C | 60 | cWW | tSW | cWW | |
2 | IL_3V2F_108 | 3V2F | 0.1695 | 1 | B | 5S Ribosomal RNA | G | 23 | G | 24 | A | 26 | C | 27 | C | 28 | * | G | 56 | A | 57 | A | 58 | A | 59 | C | 60 | cWW | tSW | ncWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GGUCCC*GAAAC | 1 |
GGAACC*GAAAC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GUCC*AAA | 1 |
GAAC*AAA | 1 |
Release history
Release | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Date | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
Parent motif | Common motif instances | Only in IL_23262.4 | Only in the parent motif |
---|---|---|---|
IL_23262.3 Compare | IL_3V2F_108, IL_2QBG_002 | IL_2ZJR_104 |
Children motifs
Child motif | Common motif instances | Only in IL_23262.4 | Only in the child motif |
---|---|---|---|
IL_67024.1 Compare | IL_2QBG_002 | IL_3V2F_108 | IL_4IOA_105 |
- Annotations
-
- (2)
- Basepair signature
- cWW-R-R-R-tSW-L-cWW
- Heat map statistics
- Min 0.17 | Avg 0.08 | Max 0.17
Coloring options: