#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5break 6 7 8 9 101-102-42-95-6
1 IL_2QBG_0022QBG0.00001A5S rRNAG23G24C26C27C28*G56A57A58A59C60cWWtSWcWW
2 IL_3V2F_1083V2F0.16951B5S Ribosomal RNAG23G24A26C27C28*G56A57A58A59C60cWWtSWncWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GGUCCC*GAAAC1
GGAACC*GAAAC1
Non-Watson-Crick part of the motif
SequenceCounts
GUCC*AAA1
GAAC*AAA1

Release history

Release1.11.21.31.41.51.61.71.81.91.101.111.121.13
Date2013-04-082013-05-042013-06-012013-07-012013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-29
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_23262.4Only in the parent motif
IL_23262.3
Compare
IL_3V2F_108, IL_2QBG_002IL_2ZJR_104

Children motifs

Child motifCommon motif instancesOnly in IL_23262.4Only in the child motif
IL_67024.1
Compare
IL_2QBG_002IL_3V2F_108IL_4IOA_105
Annotations
  • (2)
  • Basepair signature
    cWW-R-R-R-tSW-L-cWW
    Heat map statistics
    Min 0.17 | Avg 0.08 | Max 0.17
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.0836 s