Motif IL_24143.1 Version IL_24143.1 of this group appears in releases 0.6 to 0.8

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7	break		8		9		10		11		12	1-12	7-8	8-10
1	IL_3U5F_077	3U5F	0	1	6	18S rRNA	G	1488	U	1489	C	1490	U	1491	A	1492	A	1493	C	1494	*	G	1513	U	1514	A	1515	U	1517	C	1518	cWW	cWW	cSs

3D structures

Complete motif including flanking bases

Sequence	Counts
GUCUAAC*GUAAUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UCUAA*UAAU	1

Release history

Release	0.6	0.7	0.8
Date	2012-04-02	2013-02-17	2013-02-17
Status	New id, no parents	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

Child motif	Common motif instances	Only in IL_24143.1	Only in the child motif
IL_62499.3 Compare	IL_3U5F_077		IL_2AW7_057, IL_1FJG_050

Annotations: (1)
Basepair signature: cWW-tSS-L-R-cSS-R-L-L-L-L-cWW
Heat map statistics: Min 0.00 | Avg 0.00 | Max 0.00

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view

reading 843 atoms

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3 models in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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843 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 123 ms

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Coloring options: Nucleotide numbers

Motif IL_24143.1 Version IL_24143.1 of this group appears in releases 0.6 to 0.8 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_24143.1 Version IL_24143.1 of this group appears in releases 0.6 to 0.8

Download

Csv

Json