Motif IL_62499.3 Version IL_62499.3 of this group appears in releases 0.9 to 0.10
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 1-3 | 1-7 | 3-4 | 4-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5F_077 | 3U5F | 0.7865 | 6 | 6 | 18S rRNA | G | 1488 | U | 1489 | C | 1494 | * | G | 1513 | U | 1514 | A | 1515 | C | 1518 | cWW | cWW | cSs | ||
| 2 | IL_1FJG_050 | 1FJG | 0.0000 | 3 | 180 degree turn (H) | A | SSU rRNA | G | 1255 | A | 1256 | G | 1258 | * | C | 1277 | U | 1278 | A | 1279 | C | 1282 | cSs | cWW | cWW | |
| 3 | IL_2AW7_057 | 2AW7 | 0.5149 | 3 | A | 16S ribosomal RNA | G | 1255 | A | 1256 | G | 1258 | * | C | 1277 | G | 1278 | G | 1279 | C | 1282 | cSs | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUCUAAC*GUAAUC | 1 |
| GAUG*CUAAUC | 1 |
| GAAG*CGGACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCUAA*UAAU | 1 |
| AU*UAAU | 1 |
| AA*GGAC | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_62499.3 | Only in the parent motif |
|---|---|---|---|
| IL_62499.2 Compare | IL_2AW7_057, IL_1FJG_050 | IL_3U5F_077 | IL_1XJR_004 |
| IL_24143.1 Compare | IL_3U5F_077 | IL_2AW7_057, IL_1FJG_050 |
Children motifs
| Child motif | Common motif instances | Only in IL_62499.3 | Only in the child motif |
|---|---|---|---|
| IL_62499.4 Compare | IL_2AW7_057, IL_1FJG_050 | IL_3U5F_077 | IL_1XJR_004 |
| IL_97961.1 Compare | IL_3U5F_077 | IL_2AW7_057, IL_1FJG_050 |
- Annotations
-
- (2)
- 180 degree turn (H) (1)
- Basepair signature
- cWW-cSS-L-R-R-cWW
- Heat map statistics
- Min 0.51 | Avg 0.47 | Max 0.83
Coloring options: