Motif IL_24358.1 Version IL_24358.1 of this group appears in releases 1.1 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | 2-4 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3RW6_003 | 3RW6 | 0.0000 | 1 | Minor groove platform | H | constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA | A | 20 | G | 21 | * | U | 38 | A | 40 | U | 41 | cWW | cWW | tSH | |
| 2 | IL_3U5F_073 | 3U5F | 0.9433 | 3 | 6 | 18S rRNA | A | 1345 | A | 1348 | * | U | 1377 | C | 1379 | U | 1380 | cWW | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AG*UAAU | 1 |
| AAUA*UUCU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AA | 1 |
| AU*UC | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|
| Date | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_24358.1 | Only in the parent motif |
|---|---|---|---|
| IL_16377.1 Compare | IL_3RW6_003 | IL_3U5F_073 | IL_4FAW_005 |
| IL_77195.1 Compare | IL_3U5F_073 | IL_3RW6_003 |
Children motifs
| Child motif | Common motif instances | Only in IL_24358.1 | Only in the child motif |
|---|---|---|---|
| IL_67887.1 Compare | IL_3RW6_003 | IL_3U5F_073 | IL_4FAW_005 |
| IL_88119.1 Compare | IL_3U5F_073 | IL_3RW6_003 |
- Annotations
-
- Minor groove platform (1)
- (1)
- Basepair signature
- cWW-R-cWW
- Heat map statistics
- Min 0.94 | Avg 0.47 | Max 0.94
Coloring options: