Motif IL_67887.1 Version IL_67887.1 of this group appears in releases 1.5 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3RW6_003 | 3RW6 | 0.0000 | 1 | Minor groove platform | H | constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA | A | 20 | G | 21 | * | U | 38 | A | 40 | U | 41 | cWW | cWW | tSH |
| 2 | IL_4FAW_005 | 4FAW | 0.9275 | 2 | A | Group II catalytic intron D1-D4-1 | G | 128 | G | 129 | * | U | 234 | G | 236 | U | 238 | cWW | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AG*UAAU | 1 |
| GG*UUGAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AA | 1 |
| *UGA | 1 |
Release history
| Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_67887.1 | Only in the parent motif |
|---|---|---|---|
| IL_56077.1 Compare | IL_4FAW_005 | IL_3RW6_003 | IL_2XZM_026, IL_4IOA_094 |
| IL_24358.1 Compare | IL_3RW6_003 | IL_4FAW_005 | IL_3U5F_073 |
Children motifs
| Child motif | Common motif instances | Only in IL_67887.1 | Only in the child motif |
|---|---|---|---|
| IL_67887.2 Compare | IL_3RW6_003, IL_4FAW_005 | IL_4NVV_057 |
- Annotations
-
- Minor groove platform (1)
- Basepair signature
- cWW-tSH-cWW
- Heat map statistics
- Min 0.93 | Avg 0.46 | Max 0.93
Coloring options: