Motif IL_24856.1 Version IL_24856.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5J7L_285 | 5J7L | 0.2017 | 2 | DA | LSU rRNA | G | 1059 | U | 1060 | G | 1062 | * | C | 1076 | A | 1077 | C | 1079 | ncWW | cWW | |
| 2 | IL_1MMS_003 | 1MMS | 0.0919 | 2 | D | 23S RIBOSOMAL RNA | G | 1059 | U | 1060 | G | 1062 | * | C | 1076 | A | 1077 | C | 1079 | cWW | cWW | |
| 3 | IL_5D8H_002 | 5D8H | 0.0000 | 2 | A | LSU rRNA | G | 1169 | U | 1170 | G | 1172 | * | C | 1186 | A | 1187 | C | 1189 | cWW | cWW | |
| 4 | IL_1QA6_003 | 1QA6 | 0.1350 | 2 | D | 58 NUCLEOTIDE RIBOSOMAL RNA DOMAIN | G | 109 | U | 110 | G | 112 | * | C | 126 | A | 127 | C | 129 | cWW | cWW | |
| 5 | IL_4V19_019 | 4V19 | 0.1794 | 2 | A | LSU rRNA | G | 502 | U | 503 | G | 505 | * | C | 519 | A | 520 | C | 522 | cWW | cWW | |
| 6 | IL_3J7Y_022 | 3J7Y | 0.5271 | 2 | A | LSU rRNA | G | 2170 | U | 2171 | G | 2173 | * | C | 2187 | A | 2188 | C | 2190 | cWW | ||
| 7 | IL_2ZI0_001 | 2ZI0 | 0.8620 | 0 | Isolated near basepair | D+C | RNA (21-mer) | U | 9 | U | 10 | A | 11 | * | U | 9 | U | 10 | A | 11 | cWW | cWW |
| 8 | IL_2ZI0_002 | 2ZI0 | 0.8620 | 0 | Isolated near basepair | D+C | RNA (21-mer) | U | 9||||2_545 | U | 10||||2_545 | A | 11||||2_545 | * | U | 9||||2_545 | U | 10||||2_545 | A | 11||||2_545 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUG*CAUC | 3 |
| GUAG*CAUC | 2 |
| UUA*UUA | 2 |
| GUAG*CACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UU*AU | 3 |
| UA*AU | 2 |
| U*U | 2 |
| UA*AC | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Isolated near basepair (2)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.09 | Avg 0.46 | Max 0.93
Coloring options: