Motif IL_22658.1 Version IL_22658.1 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4BPP_063 | 4BPP | 0.6390 | 0 | A | 18S RRNA | U | 1221 | U | 1222 | U | 1223 | * | A | 1206 | C | 1207 | A | 1208 | cWW | ntSH | cWW |
| 2 | IL_4M4O_004 | 4M4O | 0.0000 | 0 | B | RNA (59-MER) | G | 26 | A | 27 | G | 28 | * | C | 39 | A | 40 | C | 41 | cWW | cWW | |
| 3 | IL_4M6D_013 | 4M6D | 0.1538 | 0 | H | aptamer | G | 26 | A | 27 | G | 28 | * | C | 39 | A | 40 | C | 41 | cWW | cWW | |
| 4 | IL_1LNG_001 | 1LNG | 0.5010 | 1 | B | SRP S RNA | G | 152 | A | 153 | G | 154 | * | U | 175 | A | 177 | C | 178 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAG*CAC | 2 |
| UUU*ACA | 1 |
| GAG*UAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*A | 2 |
| U*C | 1 |
| A*AA | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_22658.1 | Only in the parent motif |
|---|---|---|---|
| IL_66654.1 Compare | IL_4M4O_004, IL_4M6D_013 | IL_1LNG_001, IL_4BPP_063 | IL_3U5F_012, IL_4JK0_003 |
| IL_12147.1 Compare | IL_4BPP_063, IL_1LNG_001 | IL_4M4O_004, IL_4M6D_013 |
Children motifs
| Child motif | Common motif instances | Only in IL_22658.1 | Only in the child motif |
|---|---|---|---|
| IL_60760.1 Compare | IL_4M4O_004, IL_4M6D_013 | IL_1LNG_001, IL_4BPP_063 | IL_3Q1Q_006, IL_3E5C_001, IL_3BNL_002, IL_4CUV_113 |
| IL_24955.1 Compare | IL_4BPP_063 | IL_4M4O_004, IL_4M6D_013, IL_1LNG_001 | IL_3J7A_020, IL_4J5V_004 |
| IL_45617.1 Compare | IL_1LNG_001 | IL_4M4O_004, IL_4M6D_013, IL_4BPP_063 |
- Annotations
-
- (4)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.15 | Avg 0.42 | Max 0.91
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