Motif IL_24982.2 Version IL_24982.2 of this group appears in releases 0.6 to 0.6
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-8 | 4-7 | 5-6 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1FJG_023 | 1FJG | 0.5531 | 0 | tSH-tHW-tHS (H) | A | U | 580 | G | 581 | U | 582 | A | 583 | G | 584 | * | U | 757 | G | 758 | A | 759 | G | 760 | G | 761 | cWW | tWH | tHS | cWW | |
2 | IL_3U5F_053 | 3U5F | 0.5561 | 0 | 6 | C | 1010 | G | 1011 | U | 1012 | A | 1013 | G | 1014 | * | C | 990 | G | 991 | A | 992 | A | 993 | G | 994 | cWW | tSH | tWH | tHS | cWW | |
3 | IL_2QWY_007 | 2QWY | 0.5309 | 0 | tSH-tHW-tHS | C | C | 16 | G | 17 | U | 18 | A | 19 | U | 20 | * | A | 46 | A | 47 | A | 48 | A | 49 | G | 50 | cWW | tSH | tWH | tHS | cWW |
4 | IL_1FJG_033 | 1FJG | 0.2173 | 0 | tSH-tHW-tHS (H) | A | G | 799 | G | 800 | U | 801 | A | 802 | G | 803 | * | C | 779 | A | 780 | A | 781 | A | 782 | C | 783 | cWW | tSH | tWH | tHS | cWW |
5 | IL_2AW7_040 | 2AW7 | 0.3043 | 0 | A | G | 799 | G | 800 | U | 801 | A | 802 | G | 803 | * | C | 779 | A | 780 | A | 781 | A | 782 | C | 783 | cWW | tSH | tWH | tHS | cWW | |
6 | IL_2QBG_052 | 2QBG | 0.2950 | 0 | B | C | 1370 | G | 1371 | U | 1372 | A | 1373 | G | 1374 | * | C | 1357 | G | 1358 | A | 1359 | G | 1360 | G | 1361 | cWW | tSH | tWH | tHS | cWW | |
7 | IL_1S72_055 | 1S72 | 0.2542 | 0 | tSH-tHW-tHS (H) | 0 | G | 1542 | G | 1543 | U | 1544 | C | 1545 | G | 1546 | * | U | 1639 | C | 1640 | A | 1641 | A | 1642 | C | 1643 | cWW | tSH | tWH | tHS | cWW |
8 | IL_3U5F_035 | 3U5F | 0.2193 | 0 | 6 | C | 627 | G | 628 | U | 629 | A | 630 | G | 631 | * | U | 968 | C | 969 | A | 970 | A | 971 | G | 972 | cWW | tSH | tWH | tHS | cWW | |
9 | IL_3UXR_050 | 3UXR | 0.2005 | 0 | A | C | 1370 | G | 1371 | U | 1372 | A | 1373 | G | 1374 | * | U | 1357 | G | 1358 | A | 1359 | A | 1360 | G | 1361 | cWW | tSH | ntWW | tHS | cWW | |
10 | IL_2QBG_058 | 2QBG | 0.1802 | 0 | B | U | 1474 | G | 1475 | U | 1476 | A | 1477 | G | 1478 | * | U | 1513 | G | 1514 | A | 1515 | G | 1516 | G | 1517 | cWW | tWH | tHS | cWW | ||
11 | IL_2QWY_004 | 2QWY | 0.2141 | 0 | B | C | 16 | G | 17 | U | 18 | A | 19 | U | 20 | * | A | 46 | A | 47 | A | 48 | A | 49 | G | 50 | cWW | tWH | tHS | cWW | ||
12 | IL_2ZJR_050 | 2ZJR | 0.2041 | 0 | X | C | 1383 | G | 1384 | C | 1385 | A | 1386 | G | 1387 | * | U | 1370 | G | 1371 | A | 1372 | G | 1373 | G | 1374 | cWW | tSH | tWH | tHS | cWW | |
13 | IL_2AW7_030 | 2AW7 | 0.0000 | 0 | A | C | 580 | G | 581 | C | 582 | A | 583 | G | 584 | * | U | 757 | C | 758 | A | 759 | G | 760 | G | 761 | cWW | tSH | tWH | tHS | cWW | |
14 | IL_2XZM_035 | 2XZM | 0.1889 | 0 | A | C | 621 | G | 622 | U | 623 | A | 624 | G | 625 | * | U | 946 | C | 947 | A | 948 | A | 949 | G | 950 | cWW | tSH | tHS | ncWW | ||
15 | IL_1S72_023 | 1S72 | 0.2540 | 0 | tSH-tHW-tHS (H) | 0 | C | 705 | G | 706 | C | 707 | A | 708 | G | 709 | * | C | 719 | G | 720 | A | 721 | G | 722 | G | 723 | cWW | tSH | tWH | tHS | cWW |
16 | IL_2XZM_049 | 2XZM | 0.4181 | 0 | A | C | 988 | G | 989 | U | 990 | A | 991 | G | 992 | * | C | 968 | A | 969 | A | 970 | A | 971 | G | 972 | cWW | tSH | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UGUAG*UGAGG | 2 |
CGUAU*AAAAG | 2 |
GGUAG*CAAAC | 2 |
CGUAG*UCAAG | 2 |
CGUAG*CGAAG | 1 |
CGUAG*CGAGG | 1 |
GGUCG*UCAAC | 1 |
CGUAG*UGAAG | 1 |
CGCAG*UGAGG | 1 |
CGCAG*UCAGG | 1 |
CGCAG*CGAGG | 1 |
CGUAG*CAAAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GUA*AAA | 5 |
GUA*GAG | 3 |
GUA*GAA | 2 |
GUA*CAA | 2 |
GCA*GAG | 2 |
GUC*CAA | 1 |
GCA*CAG | 1 |
Release history
Release | 0.6 |
---|---|
Date | 2012-04-02 |
Status | Updated, 2 parents |
Parent motifs
Parent motif | Common motif instances | Only in IL_24982.2 | Only in the parent motif |
---|---|---|---|
IL_24982.1 Compare | IL_2AW7_030, IL_1S72_055, IL_2XZM_035, IL_2ZJR_050, IL_2AW7_040, IL_1FJG_033, IL_1FJG_023, IL_1S72_023, IL_2QBG_052, IL_2QWY_007, IL_2XZM_049, IL_2QWY_004 | IL_2QBG_058, IL_3U5F_035, IL_3U5F_053, IL_3UXR_050 | IL_3PYO_049, IL_2QWY_001 |
IL_44213.1 Compare | IL_2QBG_058 | IL_2AW7_030, IL_1S72_055, IL_2QBG_052, IL_2XZM_035, IL_2ZJR_050, IL_2AW7_040, IL_1FJG_033, IL_1FJG_023, IL_1S72_023, IL_3U5F_035, IL_2QWY_007, IL_3UXR_050, IL_2XZM_049, IL_2QWY_004, IL_3U5F_053 | IL_2XZM_007, IL_2QBG_075 |
Children motifs
Child motif | Common motif instances | Only in IL_24982.2 | Only in the child motif |
---|---|---|---|
IL_24982.3 Compare | IL_1S72_055, IL_2QBG_052, IL_2XZM_035, IL_2ZJR_050, IL_2AW7_040, IL_1FJG_033, IL_3U5F_035, IL_1S72_023, IL_1FJG_023, IL_2XZM_049, IL_2AW7_030, IL_2QWY_004, IL_3U5F_053, IL_2QBG_058 | IL_2QWY_007, IL_3UXR_050 | IL_3V2F_050 |
- Annotations
-
- (11)
- tSH-tHW-tHS (H) (4)
- tSH-tHW-tHS (1)
- Basepair signature
- 10_cWW-tSH-tWH-tHS-cWW
- Heat map statistics
- Min 0.09 | Avg 0.35 | Max 0.76
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