Motif IL_24982.2 Version IL_24982.2 of this group appears in releases 0.6 to 0.6

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)		1		2		3		4		5	break		6		7		8		9		10	1-10	2-9	3-8	4-7	5-6
1	IL_1FJG_023	1FJG	0.5531	0	tSH-tHW-tHS (H)	A	U	580	G	581	U	582	A	583	G	584	*	U	757	G	758	A	759	G	760	G	761	cWW		tWH	tHS	cWW
2	IL_3U5F_053	3U5F	0.5561	0		6	C	1010	G	1011	U	1012	A	1013	G	1014	*	C	990	G	991	A	992	A	993	G	994	cWW	tSH	tWH	tHS	cWW
3	IL_2QWY_007	2QWY	0.5309	0	tSH-tHW-tHS	C	C	16	G	17	U	18	A	19	U	20	*	A	46	A	47	A	48	A	49	G	50	cWW	tSH	tWH	tHS	cWW
4	IL_1FJG_033	1FJG	0.2173	0	tSH-tHW-tHS (H)	A	G	799	G	800	U	801	A	802	G	803	*	C	779	A	780	A	781	A	782	C	783	cWW	tSH	tWH	tHS	cWW
5	IL_2AW7_040	2AW7	0.3043	0		A	G	799	G	800	U	801	A	802	G	803	*	C	779	A	780	A	781	A	782	C	783	cWW	tSH	tWH	tHS	cWW
6	IL_2QBG_052	2QBG	0.2950	0		B	C	1370	G	1371	U	1372	A	1373	G	1374	*	C	1357	G	1358	A	1359	G	1360	G	1361	cWW	tSH	tWH	tHS	cWW
7	IL_1S72_055	1S72	0.2542	0	tSH-tHW-tHS (H)	0	G	1542	G	1543	U	1544	C	1545	G	1546	*	U	1639	C	1640	A	1641	A	1642	C	1643	cWW	tSH	tWH	tHS	cWW
8	IL_3U5F_035	3U5F	0.2193	0		6	C	627	G	628	U	629	A	630	G	631	*	U	968	C	969	A	970	A	971	G	972	cWW	tSH	tWH	tHS	cWW
9	IL_3UXR_050	3UXR	0.2005	0		A	C	1370	G	1371	U	1372	A	1373	G	1374	*	U	1357	G	1358	A	1359	A	1360	G	1361	cWW	tSH	ntWW	tHS	cWW
10	IL_2QBG_058	2QBG	0.1802	0		B	U	1474	G	1475	U	1476	A	1477	G	1478	*	U	1513	G	1514	A	1515	G	1516	G	1517	cWW		tWH	tHS	cWW
11	IL_2QWY_004	2QWY	0.2141	0		B	C	16	G	17	U	18	A	19	U	20	*	A	46	A	47	A	48	A	49	G	50	cWW		tWH	tHS	cWW
12	IL_2ZJR_050	2ZJR	0.2041	0		X	C	1383	G	1384	C	1385	A	1386	G	1387	*	U	1370	G	1371	A	1372	G	1373	G	1374	cWW	tSH	tWH	tHS	cWW
13	IL_2AW7_030	2AW7	0.0000	0		A	C	580	G	581	C	582	A	583	G	584	*	U	757	C	758	A	759	G	760	G	761	cWW	tSH	tWH	tHS	cWW
14	IL_2XZM_035	2XZM	0.1889	0		A	C	621	G	622	U	623	A	624	G	625	*	U	946	C	947	A	948	A	949	G	950	cWW	tSH		tHS	ncWW
15	IL_1S72_023	1S72	0.2540	0	tSH-tHW-tHS (H)	0	C	705	G	706	C	707	A	708	G	709	*	C	719	G	720	A	721	G	722	G	723	cWW	tSH	tWH	tHS	cWW
16	IL_2XZM_049	2XZM	0.4181	0		A	C	988	G	989	U	990	A	991	G	992	*	C	968	A	969	A	970	A	971	G	972	cWW	tSH	tWH	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UGUAG*UGAGG	2
CGUAU*AAAAG	2
GGUAG*CAAAC	2
CGUAG*UCAAG	2
CGUAG*CGAAG	1
CGUAG*CGAGG	1
GGUCG*UCAAC	1
CGUAG*UGAAG	1
CGCAG*UGAGG	1
CGCAG*UCAGG	1
CGCAG*CGAGG	1
CGUAG*CAAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GUA*AAA	5
GUA*GAG	3
GUA*GAA	2
GUA*CAA	2
GCA*GAG	2
GUC*CAA	1
GCA*CAG	1

Release history

Release	0.6
Date	2012-04-02
Status	Updated, 2 parents

Parent motifs

Parent motif	Common motif instances	Only in IL_24982.2	Only in the parent motif
IL_24982.1 Compare	IL_2AW7_030, IL_1S72_055, IL_2XZM_035, IL_2ZJR_050, IL_2AW7_040, IL_1FJG_033, IL_1FJG_023, IL_1S72_023, IL_2QBG_052, IL_2QWY_007, IL_2XZM_049, IL_2QWY_004	IL_2QBG_058, IL_3U5F_035, IL_3U5F_053, IL_3UXR_050	IL_3PYO_049, IL_2QWY_001
IL_44213.1 Compare	IL_2QBG_058	IL_2AW7_030, IL_1S72_055, IL_2QBG_052, IL_2XZM_035, IL_2ZJR_050, IL_2AW7_040, IL_1FJG_033, IL_1FJG_023, IL_1S72_023, IL_3U5F_035, IL_2QWY_007, IL_3UXR_050, IL_2XZM_049, IL_2QWY_004, IL_3U5F_053	IL_2XZM_007, IL_2QBG_075

Children motifs

Child motif	Common motif instances	Only in IL_24982.2	Only in the child motif
IL_24982.3 Compare	IL_1S72_055, IL_2QBG_052, IL_2XZM_035, IL_2ZJR_050, IL_2AW7_040, IL_1FJG_033, IL_3U5F_035, IL_1S72_023, IL_1FJG_023, IL_2XZM_049, IL_2AW7_030, IL_2QWY_004, IL_3U5F_053, IL_2QBG_058	IL_2QWY_007, IL_3UXR_050	IL_3V2F_050

Annotations: (11)
tSH-tHW-tHS (H) (4)
tSH-tHW-tHS (1)
Basepair signature: 10_cWW-tSH-tWH-tHS-cWW
Heat map statistics: Min 0.09 | Avg 0.35 | Max 0.76

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Coloring options: Nucleotide numbers

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