Motif IL_44213.1 Version IL_44213.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-7 | 3-6 | 4-5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2XZM_007 | 2XZM | 0.0000 | 1 | A | 18S RRNA | U | 63 | U | 64 | A | 66 | G | 67 | * | C | 78 | G | 79 | A | 80 | A | 81 | A | 82 | cWW | ntWH | ntHS | cWW |
| 2 | IL_2QBG_075 | 2QBG | 0.3741 | 0 | B | 23S rRNA | U | 1864 | U | 1865 | A | 1866 | G | 1867 | * | C | 1874 | G | 1875 | A | 1876 | A | 1877 | G | 1878 | cWW | tWH | tHS | cWW |
| 3 | IL_2QBG_058 | 2QBG | 0.4984 | 1 | B | 23S rRNA | U | 1474 | U | 1476 | A | 1477 | G | 1478 | * | U | 1513 | G | 1514 | A | 1515 | G | 1516 | G | 1517 | cWW | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUCAG*CGAAA | 1 |
| UUAG*CGAAG | 1 |
| UGUAG*UGAGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCA*GAA | 1 |
| UA*GAA | 1 |
| GUA*GAG | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in IL_44213.1 | Only in the child motif |
|---|---|---|---|
| IL_22732.1 Compare | IL_2QBG_075 | IL_2XZM_007, IL_2QBG_058 | IL_2QBG_061, IL_1FJG_061, IL_2ZY6_001 |
| IL_24982.2 Compare | IL_2QBG_058 | IL_2XZM_007, IL_2QBG_075 | IL_2AW7_030, IL_1S72_055, IL_2QBG_052, IL_2XZM_035, IL_2ZJR_050, IL_2AW7_040, IL_1FJG_033, IL_1FJG_023, IL_1S72_023, IL_3U5F_035, IL_2QWY_007, IL_3UXR_050, IL_2XZM_049, IL_2QWY_004, IL_3U5F_053 |
| IL_93424.1 Compare | IL_2XZM_007 | IL_2QBG_058, IL_2QBG_075 | IL_3UXR_049, IL_2ZJR_052, IL_2ZJR_032, IL_3U5H_024, IL_3U5H_124, IL_3U5H_126, IL_3U5H_069, IL_2XXA_007, IL_3UXR_036, IL_1X8W_006, IL_1S72_092, IL_4A1B_067, IL_3UXR_052, IL_4A1B_122, IL_4A1B_126, IL_2QBG_036, IL_1S72_052, IL_2QBG_054, IL_1S72_038, IL_2QBG_051, IL_3UXR_057, IL_2XXA_014 |
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