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Motif IL_27635.5 Version IL_27635.5 of this group appears in releases 3.88 to 3.88

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 51-52-32-43-4
1 IL_5J7L_3935J7L0.41590Major groove platformDA LSU rRNAPSU2457G2458A2459*U2493G2494cWWntSHcWW
2 IL_4WF9_0264WF90.33070Major groove platformX LSU rRNAG783A784C785*G802C803cWWcSHcWW
3 IL_5J7L_2645J7L0.42320Major groove platformDA LSU rRNAG738A739C740*G757C758cWWcSHcWW
4 IL_7A0S_0857A0S0.28300Major groove platformX LSU rRNAU2436G2437A2438*U2472G2473cWWntSHcWW
5 IL_8VTW_3518VTW0.27050Major groove platform1A LSU rRNAU2457G2458A2459*U2493G2494ncWWntSHcWW
6 IL_4WF9_0914WF90.31280Major groove platformX LSU rRNAU2484U2485A2486*U2520G2521cWWcSHcWW
7 IL_5J7L_3205J7L0.18930Major groove platformDA LSU rRNAC2050A2051A2052*U2617G2618cWWcSHtSHcWW
8 IL_8VTW_0778VTW0.20070Major groove platform1A LSU rRNAC2050A2051G2052*C2617G2618cWWcSHcWW
9 IL_4WF9_0784WF90.23050Major groove platformX LSU rRNAC2077A2078G2079*C2644G2645cWWcSHcWW
10 IL_7A0S_0737A0S0.20740Major groove platformX LSU rRNAC2033A2034G2035*C2596G2597cWWcSHcWW
11 IL_1I6U_0011I6U0.17020Major groove platformC16S RRNA FRAGMENTU9A10A11*U28G29cWWcSHntSHcWW
12 IL_5J7L_0285J7L0.17990Major groove platformAA SSU rRNAU594A595A596*U644G645cWWcSHntSHcWW
13 IL_1S03_0081S030.20620Major groove platformB47-MERC34A35A36*U16G17cWWcSHtSHcWW
14 IL_1S03_0041S030.19530Major groove platformA47-MERC34A35A36*U16G17cWWcSHtSHcWW
15 IL_4OQU_0024OQU0.20250Major groove platformASAM-I/IV riboswitchC42A43A44*U29G30cWWncSHcWW
16 IL_3OXE_0033OXE0.19170Major groove platformAdomain II of glycine riboswitchC68U69C70*G35G36cWWcSHcWW
17 IL_3NKB_0023NKB0.14420Major groove platformBHepatitis delta virus ribozymeG55U56A57*U47C48cWWcSHcWW
18 IL_8TSV_0018TSV0.12390Major groove platformA+BZika virus stem-loop A (SLA) top stemU6G7C8*G19A20cWWncSHtSHcWW
19 IL_4LFB_0244LFB0.19810Major groove platformA SSU rRNAG594G595C596*G644C645cWWncSHntSHcWW
20 IL_6CZR_4076CZR0.23400Major groove platform1a SSU rRNAG578G579C580*G628C629cWWntSHncWW
21 IL_5TBW_1025TBW0.18190Major groove platform1 LSU rRNAU2865U2866C2867*G2823G2824cWWncSHcWW
22 IL_7A0S_0847A0S0.09860Major groove platformX LSU rRNAC2475A2476C2477*G2433G2434cWWcSHcWW
23 IL_8VTW_0918VTW0.00000Major groove platform1A LSU rRNAC2496A2497C2498*G2454G2455cWWcSHcWW
24 IL_5J7L_3925J7L0.06770Major groove platformDA LSU rRNAC2496A2497OMC2498*G2454G2455cWWcSHcWW
25 IL_4V9F_0824V9F0.08400Major groove platform0 LSU rRNAU2531A2532C2533*G2489A2490cWWcSHcWW
26 IL_4WF9_0904WF90.10730Major groove platformX LSU rRNAC2523A2524C2525*G2481G2482cWWcSHcWW
27 IL_7A0S_0827A0S0.14220Major groove platformX LSU rRNAU2380A2381C2382*G2393G2394cWWcSHcWW
28 IL_1XJR_0021XJR0.20610Major groove platformAs2m RNAU37A38C39*G13G14cWWcSHcWW
29 IL_8VTW_0088VTW0.20040Major groove platform1A LSU rRNAU363|||EA363|||FC364*G272|||DG272|||EcWWcWW
30 IL_8VTW_0898VTW0.17350Major groove platform1A LSU rRNAU2401C2402C2403*G2414G2415cWWcSHcWW
31 IL_7EOG_0017EOG0.22490Major groove platformAPepper (49-MER)C5A6C7*G44G45cWWcSHcWW
32 IL_7EOM_0017EOM0.22170Major groove platformAPepper (49-MER)C5A6C7*G44G45cWWncSHcWW
33 IL_5Y85_0055Y850.23130Major groove platformD+CDNA/RNA (50-MER)C40G41C42*G9G10cWWcWW
34 IL_4LFB_0284LFB0.27640Major groove platformA SSU rRNAC747C748C749*G657G658cWWcWW
35 IL_1G1X_0051G1X0.26650Major groove platformJ+I16S RIBOSOMAL RNAC747C748C749*G657G658cWWncSHcWW
36 IL_1G1X_0021G1X0.26850Major groove platformE+D16S RIBOSOMAL RNAC747C748C749*G657G658cWWncSHcWW
37 IL_5T5A_0025T5A0.19430Major groove platformADNA/RNA (71-MER)C50G51C52*G10G11cWWncSHcWW
38 IL_6CZR_1406CZR0.32640Major groove platform1a SSU rRNAC731C732C733*G641G642cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAC*GG5
CAA*UG4
CCC*GG4
CAG*CG3
UAC*GG3
GAC*GC2
UGA*UG2
UAA*UG2
GGC*GC2
CGC*GG2
(PSU)GA*UG1
UUA*UG1
CUC*GG1
GUA*UC1
UGC*GA1
UUC*GG1
CA(OMC)*GG1
UAC*GA1
UCC*GG1
Non-Watson-Crick part of the motif
SequenceCounts
A*21
G*8
C*5
U*4

Release history

Release3.88
Date2024-09-11
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Major groove platform (38)
    • Basepair signature
    cWW-cSH-cWW
    Heat map statistics
    Min 0.04 | Avg 0.28 | Max 0.64
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