Motif IL_27635.5 Version IL_27635.5 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-3 | 2-4 | 3-4 | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_5J7L_393 | 5J7L | 0.4159 | 0 | Major groove platform | DA | LSU rRNA | PSU | 2457 | G | 2458 | A | 2459 | * | U | 2493 | G | 2494 | cWW | ntSH | cWW | |
2 | IL_4WF9_026 | 4WF9 | 0.3307 | 0 | Major groove platform | X | LSU rRNA | G | 783 | A | 784 | C | 785 | * | G | 802 | C | 803 | cWW | cSH | cWW | |
3 | IL_5J7L_264 | 5J7L | 0.4232 | 0 | Major groove platform | DA | LSU rRNA | G | 738 | A | 739 | C | 740 | * | G | 757 | C | 758 | cWW | cSH | cWW | |
4 | IL_7A0S_085 | 7A0S | 0.2830 | 0 | Major groove platform | X | LSU rRNA | U | 2436 | G | 2437 | A | 2438 | * | U | 2472 | G | 2473 | cWW | ntSH | cWW | |
5 | IL_8VTW_351 | 8VTW | 0.2705 | 0 | Major groove platform | 1A | LSU rRNA | U | 2457 | G | 2458 | A | 2459 | * | U | 2493 | G | 2494 | ncWW | ntSH | cWW | |
6 | IL_4WF9_091 | 4WF9 | 0.3128 | 0 | Major groove platform | X | LSU rRNA | U | 2484 | U | 2485 | A | 2486 | * | U | 2520 | G | 2521 | cWW | cSH | cWW | |
7 | IL_5J7L_320 | 5J7L | 0.1893 | 0 | Major groove platform | DA | LSU rRNA | C | 2050 | A | 2051 | A | 2052 | * | U | 2617 | G | 2618 | cWW | cSH | tSH | cWW |
8 | IL_8VTW_077 | 8VTW | 0.2007 | 0 | Major groove platform | 1A | LSU rRNA | C | 2050 | A | 2051 | G | 2052 | * | C | 2617 | G | 2618 | cWW | cSH | cWW | |
9 | IL_4WF9_078 | 4WF9 | 0.2305 | 0 | Major groove platform | X | LSU rRNA | C | 2077 | A | 2078 | G | 2079 | * | C | 2644 | G | 2645 | cWW | cSH | cWW | |
10 | IL_7A0S_073 | 7A0S | 0.2074 | 0 | Major groove platform | X | LSU rRNA | C | 2033 | A | 2034 | G | 2035 | * | C | 2596 | G | 2597 | cWW | cSH | cWW | |
11 | IL_1I6U_001 | 1I6U | 0.1702 | 0 | Major groove platform | C | 16S RRNA FRAGMENT | U | 9 | A | 10 | A | 11 | * | U | 28 | G | 29 | cWW | cSH | ntSH | cWW |
12 | IL_5J7L_028 | 5J7L | 0.1799 | 0 | Major groove platform | AA | SSU rRNA | U | 594 | A | 595 | A | 596 | * | U | 644 | G | 645 | cWW | cSH | ntSH | cWW |
13 | IL_1S03_008 | 1S03 | 0.2062 | 0 | Major groove platform | B | 47-MER | C | 34 | A | 35 | A | 36 | * | U | 16 | G | 17 | cWW | cSH | tSH | cWW |
14 | IL_1S03_004 | 1S03 | 0.1953 | 0 | Major groove platform | A | 47-MER | C | 34 | A | 35 | A | 36 | * | U | 16 | G | 17 | cWW | cSH | tSH | cWW |
15 | IL_4OQU_002 | 4OQU | 0.2025 | 0 | Major groove platform | A | SAM-I/IV riboswitch | C | 42 | A | 43 | A | 44 | * | U | 29 | G | 30 | cWW | ncSH | cWW | |
16 | IL_3OXE_003 | 3OXE | 0.1917 | 0 | Major groove platform | A | domain II of glycine riboswitch | C | 68 | U | 69 | C | 70 | * | G | 35 | G | 36 | cWW | cSH | cWW | |
17 | IL_3NKB_002 | 3NKB | 0.1442 | 0 | Major groove platform | B | The hepatitis delta virus ribozyme | G | 55 | U | 56 | A | 57 | * | U | 47 | C | 48 | cWW | cSH | cWW | |
18 | IL_8TSV_001 | 8TSV | 0.1239 | 0 | Major groove platform | A+B | Zika virus stem-loop A (SLA) top stem | U | 6 | G | 7 | C | 8 | * | G | 19 | A | 20 | cWW | ncSH | tSH | cWW |
19 | IL_4LFB_024 | 4LFB | 0.1981 | 0 | Major groove platform | A | SSU rRNA | G | 594 | G | 595 | C | 596 | * | G | 644 | C | 645 | cWW | ncSH | ntSH | cWW |
20 | IL_6CZR_407 | 6CZR | 0.2340 | 0 | Major groove platform | 1a | SSU rRNA | G | 578 | G | 579 | C | 580 | * | G | 628 | C | 629 | cWW | ntSH | ncWW | |
21 | IL_5TBW_102 | 5TBW | 0.1819 | 0 | Major groove platform | 1 | LSU rRNA | U | 2865 | U | 2866 | C | 2867 | * | G | 2823 | G | 2824 | cWW | ncSH | cWW | |
22 | IL_7A0S_084 | 7A0S | 0.0986 | 0 | Major groove platform | X | LSU rRNA | C | 2475 | A | 2476 | C | 2477 | * | G | 2433 | G | 2434 | cWW | cSH | cWW | |
23 | IL_8VTW_091 | 8VTW | 0.0000 | 0 | Major groove platform | 1A | LSU rRNA | C | 2496 | A | 2497 | C | 2498 | * | G | 2454 | G | 2455 | cWW | cSH | cWW | |
24 | IL_5J7L_392 | 5J7L | 0.0677 | 0 | Major groove platform | DA | LSU rRNA | C | 2496 | A | 2497 | OMC | 2498 | * | G | 2454 | G | 2455 | cWW | cSH | cWW | |
25 | IL_4V9F_082 | 4V9F | 0.0840 | 0 | Major groove platform | 0 | LSU rRNA | U | 2531 | A | 2532 | C | 2533 | * | G | 2489 | A | 2490 | cWW | cSH | cWW | |
26 | IL_4WF9_090 | 4WF9 | 0.1073 | 0 | Major groove platform | X | LSU rRNA | C | 2523 | A | 2524 | C | 2525 | * | G | 2481 | G | 2482 | cWW | cSH | cWW | |
27 | IL_7A0S_082 | 7A0S | 0.1422 | 0 | Major groove platform | X | LSU rRNA | U | 2380 | A | 2381 | C | 2382 | * | G | 2393 | G | 2394 | cWW | cSH | cWW | |
28 | IL_1XJR_002 | 1XJR | 0.2061 | 0 | Major groove platform | A | s2m RNA | U | 37 | A | 38 | C | 39 | * | G | 13 | G | 14 | cWW | cSH | cWW | |
29 | IL_8VTW_008 | 8VTW | 0.2004 | 0 | Major groove platform | 1A | LSU rRNA | U | 363|||E | A | 363|||F | C | 364 | * | G | 272|||D | G | 272|||E | cWW | cWW | ||
30 | IL_8VTW_089 | 8VTW | 0.1735 | 0 | Major groove platform | 1A | LSU rRNA | U | 2401 | C | 2402 | C | 2403 | * | G | 2414 | G | 2415 | cWW | cSH | cWW | |
31 | IL_7EOG_001 | 7EOG | 0.2249 | 0 | Major groove platform | A | Pepper (49-MER) | C | 5 | A | 6 | C | 7 | * | G | 44 | G | 45 | cWW | cSH | cWW | |
32 | IL_7EOM_001 | 7EOM | 0.2217 | 0 | Major groove platform | A | Pepper (49-MER) | C | 5 | A | 6 | C | 7 | * | G | 44 | G | 45 | cWW | ncSH | cWW | |
33 | IL_5Y85_005 | 5Y85 | 0.2313 | 0 | Major groove platform | D+C | DNA/RNA (50-MER) | C | 40 | G | 41 | C | 42 | * | G | 9 | G | 10 | cWW | cWW | ||
34 | IL_4LFB_028 | 4LFB | 0.2764 | 0 | Major groove platform | A | SSU rRNA | C | 747 | C | 748 | C | 749 | * | G | 657 | G | 658 | cWW | cWW | ||
35 | IL_1G1X_005 | 1G1X | 0.2665 | 0 | Major groove platform | J+I | 16S RIBOSOMAL RNA | C | 747 | C | 748 | C | 749 | * | G | 657 | G | 658 | cWW | ncSH | cWW | |
36 | IL_1G1X_002 | 1G1X | 0.2685 | 0 | Major groove platform | E+D | 16S RIBOSOMAL RNA | C | 747 | C | 748 | C | 749 | * | G | 657 | G | 658 | cWW | ncSH | cWW | |
37 | IL_5T5A_002 | 5T5A | 0.1943 | 0 | Major groove platform | A | DNA/RNA (71-MER) | C | 50 | G | 51 | C | 52 | * | G | 10 | G | 11 | cWW | ncSH | cWW | |
38 | IL_6CZR_140 | 6CZR | 0.3264 | 0 | Major groove platform | 1a | SSU rRNA | C | 731 | C | 732 | C | 733 | * | G | 641 | G | 642 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CAC*GG | 5 |
CAA*UG | 4 |
CCC*GG | 4 |
CAG*CG | 3 |
UAC*GG | 3 |
GAC*GC | 2 |
UGA*UG | 2 |
UAA*UG | 2 |
GGC*GC | 2 |
CGC*GG | 2 |
(PSU)GA*UG | 1 |
UUA*UG | 1 |
CUC*GG | 1 |
GUA*UC | 1 |
UGC*GA | 1 |
UUC*GG | 1 |
CA(OMC)*GG | 1 |
UAC*GA | 1 |
UCC*GG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
A* | 21 |
G* | 8 |
C* | 5 |
U* | 4 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove platform (38)
- Basepair signature
- cWW-cSH-cWW
- Heat map statistics
- Min 0.04 | Avg 0.28 | Max 0.64
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